<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00893

Description Uncharacterized protein
SequenceMSEVKKRRQVQLTVLSVFFFLLNLVIYPSEGSEADNGLPRNNWSHHANAFNNSSSQDKLLTSNFLFSLPIQKPRYIMCRKLVLKILAIRILSYSIKQVWQALSTLELSSRNYVKPGKIVPLNKGFSTSVSRASRQPIHQSVSDIKSTFQANVESHQAVRQSSIRGGESGSYKATSVTTSGYGVAEVRRTGTHISLSSSFHPQAVNPPSNHSIHISDMARSGNTYPEGVDDDNILENIDVDQIVMEHYQSTCTPQPSISKFPPINPVVNKDNLVEPEATSLPPELCMKCSHGFQLGFCPEASVHLQELKDMLIGISNELIDNITDLESDQIEKLRQERMQLNMQIQQLDKYLRANLVNDERRTSHFSASTATPSAFQYETPPAVPFKMDPTRLDPQFYAHSEPNGFDRWDSSSVSFTSTDWYGASAAPLEREPYVPKYVEVNYIEGSNDKKWSSRDFPWTKKLEANNKRVFGNHSFRPNQREVINATMCGHDVFVLMPTGGGKSLTYQLPALICPGITLVVSPLVSLIQDQIMHLLQANIPAAYLSASMEWSEQQEILRELNSDYCKYKLLYVTPEKVAKSDVLLRQLDGLNGRGLLARIVIDEAHCVSQWGHDFRPDYQGLGVLKQKFPSVPVLALTATATISVKEDVVQALGLVNCIVFKQSFNRPNLRYSVIPKTKKCVDDIDNFIRQNHFDECGIVYCLSRMDCEKVAEKLQECGHKAAFYHGSMDAAQRAFIQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQPSSCVLYYSYSDYIRLKHMISQATVEQSFGVSGYNRASAKPSGRILETNTENLLRMVSYCENNVDCRRLLQLIHFGEKFDSLNCQKTCDNCTKTQSCIEKDVTNIAKQLVELVKMTGQQFASAHILEVYRGSLNQFVKKHRHETLSLHGAGKHLLKGEASRVLRHLVIEDILVEDVKKSDVFGSTSSVLKVNESKVQHLLYRGQPIKLRFPSTQPSKGGTSAATPAKGSLTFGKQGSPEMISPGQPQAEVDLNLSAKLYTALRMLRTILVKEAGDGVMAYHIFRNDTLQQISKKIPRTKDELLEINGIGKAKVSKYGDRVLETIEATIKEHKIDKTSGSSSNDSADSMKRRRDTVKERAGKSGDDEDFNESTGRSRKRTLKKQNSSVEATDSGDLVAYNDCIFDDDMDFDELNCDVQSNSTNSKADVNNGGRVLPSWSSPATKVSA
Length1236
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.07
Grand average of hydropathy-0.435
Instability index47.40
Isoelectric point8.34
Molecular weight138182.11
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
plasmodesma	GO:0009506	IEA:EnsemblPlants

GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:EnsemblPlants
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
cellular response to abscisic acid stimulus	GO:0071215	IEA:EnsemblPlants
cellular response to cold	GO:0070417	IEA:EnsemblPlants
DNA replication	GO:0006260	IEA:InterPro
double-strand break repair via homologous recombination	GO:0000724	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00893
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      99.42|      31|      38|     841|     871|       1
---------------------------------------------------------------------------
  841-  871 (55.50/38.12)	ENLLRMVSYCENNVD..CRRLLQLIHF.GEKFDS
  879-  912 (43.92/28.62)	DNCTKTQSCIEKDVTniAKQLVELVKMtGQQFAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.92|      33|      40|     403|     440|       2
---------------------------------------------------------------------------
  403-  440 (51.52/37.82)	NGFD..RWdsSSVSFtstDWYGASAAPLER....EPYVPKYVEV
  444-  482 (49.40/24.68)	EGSNdkKW..SSRDF...PWTKKLEANNKRvfgnHSFRPNQREV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.92|      18|     327|     814|     837|       3
---------------------------------------------------------------------------
  780-  797 (34.94/17.50)	QECGRAGRD...GQPSSCVLY
  817-  837 (26.98/19.82)	QSFGVSGYNrasAKPSGRILE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      96.65|      23|      38|     973|     995|       5
---------------------------------------------------------------------------
  939-  960 (26.94/14.72)	GAGKHL......LKGEASRVlRHLVI..ED
  973-  995 (38.22/24.08)	GSTSSV......LKVNESKV.QHLLYRGQP
 1008- 1036 (31.48/18.49)	GGTSAAtpakgsLTFGKQGS.PEMISPGQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.40|      22|      38|     656|     680|       7
---------------------------------------------------------------------------
  656-  680 (31.50/30.82)	NC.IVFkqSFNRPNLRySVIPKTKKC
  695-  717 (36.90/22.79)	ECgIVY..CLSRMDCE.KVAEKLQEC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.06|      36|     117|     246|     281|       8
---------------------------------------------------------------------------
  246-  281 (67.26/47.64)	HYQ.STCTPQPSISKFPPINPVVNKDNLVEPE..ATSLP
  364-  402 (58.81/40.59)	HFSaSTATPSAFQYETPPAVPFKMDPTRLDPQfyAHSEP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00893 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) NCDVQSNSTNSKADVNNGGRVLPSWSSPATKVSA
2) PSTQPSKGGTSAATPAKGSLTFGKQGSPEMISPGQPQ
3) TIKEHKIDKTSGSSSNDSADSMKRRRDTVKERAGKSGDDEDFNESTGRSRKRTLKKQNSSVEA
1203
1001
1117
1236
1037
1179










Molecular Recognition Features






MoRF SequenceStartStop




NANANA