<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00890

Description Uncharacterized protein
SequenceMAGMEGIAAVGGTGIGSGSGIGGGGGGVSVSEASQQQQQQGTSRVAVVERLNPAVQQQLNLDSVRTRAISLFKAISRILDDFDAIARTNAVPKWQDILGQFSMVNLELFNIVEDIKKVSKAFVVHPKNVNAENAAILPVMLSSKLLPEMEMEDNSKREQLLLGMQNLPLSLQIDKLKNRIDMIGAACESAEKVIADTRKAYFGTRQGPTLLPTIDKVQAAKIQEQENLLRHAVNHGEGLRIPVEQRQITSSLPVHLVDILGDGAQTFTDSSGMYMKSTPPLASSNTSSQGAMLQAAGAPHMGRAAASPSAASSTSFDHTTTSPLPYANSPRSGASMMNTPSPQQQSHQQQQQQQQQQRQKMMQLPQHQQQLLAQQQFRQSSLPGLGQNQQGQLHDLQGQSQQKFQALHSQHQMQFSQPLGAQQFQGRQLTSGAIQHGLGQSQLNQGSQLNRHLNQFSNPANTALFSAAQNTPTSQMIPNMSAMMPSQPLPPRMQFGVSGGSRTLTSQNLSDQMFGMGTTNPGSMMPIQQQQQQHGSQGAFGNMQQNMQNLQPGMVPLQNTPQNHPNFQQQRPQNQQ
Length576
PositionHead
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.04
Grand average of hydropathy-0.578
Instability index55.09
Isoelectric point9.43
Molecular weight62474.59
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
defense response to fungus	GO:0050832	IEA:EnsemblPlants
regulation of flower development	GO:0009909	IEA:EnsemblPlants









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00890
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.91|      29|     313|      35|      71|       1
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   35-   63 (50.94/11.92)	QQQQQ........................QGTSRVAVVERLNPAVQQQLNLDS
  349-  374 (48.35/10.82)	QQQQQ........................QQQQRQKMM.QL.PQHQQQL.LAQ
  399-  447 (28.62/ 6.72)	QSQQKfqalhsqhqmqfsqplgaqqfqgrQLTSG.AIQHGLG...QSQLNQGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.03|      18|      19|     528|     546|       3
---------------------------------------------------------------------------
  377-  394 (31.38/ 9.67)	FRQSSLPGLGQN............QQGQLH
  535-  564 (24.66/ 7.41)	GSQGAFGNMQQNmqnlqpgmvplqNTPQNH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.36|      16|      19|     305|     323|       4
---------------------------------------------------------------------------
  305-  323 (19.96/15.64)	AASPSaaSSTSFdHTTTSP
  327-  342 (30.40/13.42)	ANSPR..SGASM.MNTPSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      57.14|      15|      39|     410|     424|       6
---------------------------------------------------------------------------
  410-  424 (29.35/13.66)	QHQMQFSQPLGAQQF
  451-  465 (27.79/12.57)	RHLNQFSNPANTALF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      76.59|      18|      19|      65|      82|       7
---------------------------------------------------------------------------
   65-   82 (28.28/21.91)	RTRAISLFK...AISRILDDF
   87-  101 (26.86/20.45)	RTNAVPKWQ...DI...LGQF
  102-  122 (21.45/14.87)	SMVNLELFNiveDIKKVSKAF
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.43|      12|      29|     516|     528|       9
---------------------------------------------------------------------------
  516-  528 (21.05/15.02)	MGTTNPGsMMPIQ
  547-  558 (24.38/12.73)	MQNLQPG.MVPLQ
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00890 with Med8 domain of Kingdom Viridiplantae
Unable to open file!