<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00888

Description Uncharacterized protein
SequenceMANNSQYTGMQPHRPPLIGSLGPPQSALPSMPLQYRAVPPPQQTQPYVALAPQPFLGHANVRMPPPPLPPAPQIQFHQPMHQLPLIPPPAGEGLPQAQARPLQDFQQSGPPTPVPGQPQQSTQISNNYMPGFGGPRMPLSSSNTQINVDPASQHQPMSQTTLLNFPAEGQAWLSNGNQGTKPITPVQQTQEPCATAANPEITSKPDLGEKVSLLWIEHTARNGKKYYYNRLTRLSTWEKPLALMTPIERADASTDWREYTSPDGRKYYYNRVTKQSKWRIPDEVKLARERVNLDSLNKTQERKDASSQDSAAVSTSEVNASSSSIEASIFPAQPAVSSPNPVAPIVTEQSLVTPESSIPAAEVSPVAMDDVDMQTSLESHTPFVAVLDKDAVSVALETTVRTPVSSCAVLSAPDTSVAGVSPGNSEEAKKDIKDSARSEEKTVEQGPLVYENKLEAKTAFKALLETENVGSDWTWDQAMRVIINDRRYGALKSLGERKQAFNEFASQKKKQEAEERRARQKKAREDFKKMLEECKELTPSIRWSKAISIFEDDERFKAVERAKDREDLFENYKEELEKKVHSNLIYRFTNQLNSNEFVSDTIFFFHCCYGLRASPVMERAKAMEEQKRNRVEYLEFLKSCDFIKASSQWRKVQDRLEADERCSRLEKIDRLEIFQEYIRDLEKEEEEQLKLRREEQRKAERKNRDEFRKLMEEHVAAGILTAKTLWRDYCIQVKDSPAYLAVSSNSSGSTAKELFDDVSEELVKKYLDDKAQIRDAVDIREISLTSSSTLDDFKAAIAKDVGSPVSDVNLKLVFDELLERAREKEEKEAKRRKRLADDLYQFLHGSKEISISSRWEDWKQLIEHRQDNIVG
Length871
PositionUnknown
OrganismCoffea canephora (Robusta coffee)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> asterids> lamiids> Gentianales> Rubiaceae> Ixoroideae> Gardenieae complex> Bertiereae - Coffeeae clade> Coffeeae> Coffea.
Aromaticity0.07
Grand average of hydropathy-0.754
Instability index55.25
Isoelectric point5.83
Molecular weight98624.75
Publications
PubMed=25190796

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:EnsemblPlants

GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00888
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     137.37|      36|      39|     205|     240|       1
---------------------------------------------------------------------------
  205-  240 (68.63/51.49)	PDLGEKVSLLWIEHTARNGKKYYYNRLTRLSTWEKP
  246-  281 (68.74/51.59)	PIERADASTDWREYTSPDGRKYYYNRVTKQSKWRIP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      71.28|      14|      15|      82|      95|       2
---------------------------------------------------------------------------
   34-   46 (23.19/ 9.15)	QYRA.......VPPPQ.QTQP
   52-   72 (20.22/ 7.02)	PQPFlghanvrMPPPPLPPAP
   82-   95 (27.87/12.51)	QLPL.......IPPPAGEGLP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     283.02|      62|      66|     455|     516|       3
---------------------------------------------------------------------------
  378-  434 (47.39/27.52)	....................ESHTPFVAVL.D.KDAVSV..ALETTVRTPVSscavlsapDTSVAGV.SPGNSEEAKKDI...KD
  435-  509 (79.00/51.16)	SARSEEKtveqgplvyenklEAKTAFKALL.E.TENVGSDWTWDQAMRVIIN........DRRYGALKSLGERKQAFNEFASQKK
  510-  572 (71.06/45.22)	KQEAEER........rarqkKAREDFKKMLeE.CKELTPSIRWSKAISIFED........DERFKAVERAKDREDLFENY.....
  621-  682 (85.57/56.07)	KAMEEQK.............RNRVEYLEFL.KsCDFIKASSQWRKVQDRLEA........DERCSRLEKI.DRLEIFQEYIRDLE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     109.49|      31|      66|     764|     797|       4
---------------------------------------------------------------------------
  720-  745 (38.40/26.89)	...LTAKTLWRDYCIQV......K...DSPAYL..AVSSN
  746-  780 (29.15/28.40)	SSGSTAKELFDD.....vseelvKkylDDKAQIRDAVDIR
  781-  811 (41.94/30.13)	EISLTSSSTLDDFKAAI.....aK...DVGSPVSD.VNLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      67.60|      14|      15|     138|     151|       5
---------------------------------------------------------------------------
  101-  112 (21.11/12.33)	PL..QDFQQSGPPT
  138-  151 (25.17/16.29)	PLSSSNTQINVDPA
  156-  167 (21.31/12.52)	PMSQT.TLLNF.PA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.75|      15|      15|     299|     313|       6
---------------------------------------------------------------------------
  299-  313 (23.89/18.12)	TQERKDASSQDSAAV
  315-  329 (22.87/16.96)	TSEVNASSSSIEASI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.90|      12|      20|     334|     345|       7
---------------------------------------------------------------------------
  334-  345 (22.63/13.27)	PAVSSP.NPVAPI
  354-  366 (17.27/ 8.20)	PESSIPaAEVSPV
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00888 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ERVNLDSLNKTQERKDASSQDSAAVSTSEV
2) MANNSQYTGMQPHRPPLIGSLGPPQSALPSMPLQYRAVPPPQQTQPYVALAPQPFLGHANVRMPPPPLPPAPQIQFHQPMHQLPLIPPPAGEGLPQAQARPLQDFQQSGPPTPVPGQPQQSTQISNNYMPGFGGPRMPLSSSNTQINVDPASQHQPMSQTTLLNFPAEGQAWLSNGNQGTKPITPVQQTQEPCATAANPEITSK
3) TSVAGVSPGNSEEAKKDIKDSARSEEKTVEQGPL
4) VSSPNPVAPIVTEQSLVTPESSIPAAEVSPVAMDDVDMQT
289
1
415
336
318
204
448
375










Molecular Recognition Features






MoRF SequenceStartStop




NANANA