<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00878
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MVELAPKKRRRLDSTTTTTTPSYASARYPPSCLLSNLIHRQAPHQLSSSIQSVVVTTPPKPATPAIHAFTGDHYALDLVSKSTTLLNKSPIRLAEQFHDQCLITHLVWNQRGTTLASADENGKIALWELGTSSDQWTLAYSVNLQQPPAGILWLNTDRVYQLSHDQQKFVRMPMVGPRNPYGYFAFVVVTVHGQVSVHYQRGGKIFSSFSTTLPNTGRMGAGRADVGCFGMNLASSDNWYRISHASMIIGQDGNIYLATHRANTSPKSVQIYRLSIRFPGRMNEGGIFCQPLATLRLTQPSLASSLGDFAKSSSIAVSHLQLSNQKDNVQLTLAFGAENDGSYSSFIGKWALQQKEIQISGDAIARDSFSGTTMTSNYLVLDFVDGVSVSDRFISSMTHTRHGALVVGLSDGSVHIEYRDDGDFGLLRGRGSCESSIGPTFWQAAGPRTYLNGDPDPVAGLALSPNETHIFCILSSNKLGVIRATDIRNDHDETETLSTISRLLKLSLLNETDDLDLISELIRVNAISGHDDATESLVLDVIKSYHVYCHQDQSEPLLVSPTTESSSKSSGSLEWSLPQRGRAYGLSLGVFRRLSSTKVQYTNLCKAIQLPIVLECFIGSCKSDYADITKVLDSLWSLMSLTNWTLDFMRWTLRKWNMLFNCRRPKDSKLGDISARPCHAVLLLHEESRDALSKLLVMVNEFVHYTNSASFELPNVPESLPLLLRYAKNVLSSEPVALKDVLAFLTAIKSEDLGVQDRWALLLGSKLPSDKVDRLRVITREFAEKCGQPAIYLERDSSDIIDVIQKRRIPPFTKHLWTCVRCHQYSIPTHGHPHLTANDPCLRALWNRSIGRRCVCGGLFAECL |
Length | 864 |
Position | Tail |
Organism | Lichtheimia corymbifera JMRC:FSU:9682 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina>
Mucoromycetes> Mucorales> Lichtheimiaceae> Lichtheimia.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.178 |
Instability index | 43.48 |
Isoelectric point | 8.29 |
Molecular weight | 95834.01 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP00878
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 87.37| 26| 34| 240| 266| 1
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240- 266 (44.08/35.12) YRISHASMIIGQDGNIY...LATHRAnTSP
272- 300 (43.29/29.11) YRLSIRFPGRMNEGGIFcqpLATLRL.TQP
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 227.72| 81| 194| 124| 231| 2
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20- 69 (63.95/27.71) TPSYA.SARYPPSCLLsnLIHRQAPHQLSSSIQSVVVTTPPKPATP.AIHAF...........................................
137- 229 (128.94/102.33) TLAYSvNLQQPPAGIL..WLNTDRVYQLSHDQQKFVRMPMVGPRNPyGYFAFvvvtvhgqVSVHYQRGGKIFSSFSTTLPNTGRmgAGRADVGCF
559- 591 (34.83/12.06) ............................................................VSPTTESSSKSSGSLEWSLPQRGR..AYGLSLGVF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 53.63| 18| 180| 508| 525| 5
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492- 509 (25.56/14.75) DETETLSTISRLLKLSLL
510- 527 (28.06/16.87) NETDDLDLISELIRVNAI
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