<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00876
Description |
Mediator of RNA polymerase II transcription subunit 16 |
Sequence | MVELAPKKRRRLDSTTTTTTPSYASARYPPSCLLSNLIHRQAPHQLSSSIQSVVVTTPPKPATPAIHAFTGDHYALDLVSKSTTLLNKSPIRLAEQFHDQCLITHLVWNQRGTTLASADENGKIALWELGTSSDQWTLAYSVNLQQPPAGILWLNTDRVYQLSHDQQKFVRMPMVGPRNPYGYFAFVVVTVHGQVSVHYQRGGKIFSSFSTTLPNTGRMGAGRADVGCFGMNLASSDNWYRISHASMIIGQDGNIYLATHRANTSPKSVQIYRLSIRFPGRMNEGGIFCQPLATLRLTQPSLASSLGDFAKSSSIAVSHLQLSNQKDNVQLTLAFGAENDGSYSSFIGKWALQQKEIQISGDAIARDSFSGTTMTSNYLVLDFVDGVSVSDRFISSMTHTRHGALVVGLSDGSVHIEYRDDGDFGLLRGRGSCESSIGPTFWQAAGPRTYLNGDPDPVAGLALSPNETHIFCILSSNKLGVIRATDIRNDHDETETLSTISRLLKLSLLNETDDLDLISELIRVNAISGHDDATESLVLDVIKSYHVYCHQDQSEPLLVSPTTESSSKSSGSLEWSLPQRGRAYGLSLGVFRRLSSTKVQYTNLCKAIQLPIVLECFIGSCKSDYADITKVLDSNTIVDGKATLEFDTDSLWSLMSLTNWTLDFMRWTLRKWNMLFNCRRPKDSKLGDISARPCHAVLLLHEESRDALSKLLVMVNEFVHYTNSASFELPNVPESLPLLLRYAKNVLSSEPVALKDVLAFLTAIKSEDLGVQDRWALLLGSKLPSDKVDRLRVITREFAEKCGQPAIYLERDSSDIIDVIQKRRIPPFTKHLWTCVRCHQYSIPTHGHPHLTANDPCLRALWNRSIGRRCVCGGLFAECL |
Length | 880 |
Position | Tail |
Organism | Lichtheimia corymbifera JMRC:FSU:9682 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina>
Mucoromycetes> Mucorales> Lichtheimiaceae> Lichtheimia.
|
Aromaticity | 0.08 |
Grand average of hydropathy | -0.184 |
Instability index | 42.60 |
Isoelectric point | 7.82 |
Molecular weight | 97541.80 |
Publications | |
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364149
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | |
GO - Biological Process | |
Interaction
Repeat regions
Repeats |
>MDP00876
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 178.73| 60| 180| 258| 331| 1
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263- 331 (84.30/77.77) NTSPKSVQIYRLSirfPgrmNEGGIFC....QPLATLRLTQpsLASSLGDFAKSSSIAvSHLQLS..NQKDNVQL
452- 517 (94.43/50.27) NGDPDPVAGLALS...P...NETHIFCilssNKLGVIRATD..IRNDHDETETLSTIS.RLLKLSllNETDDLDL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 132.54| 38| 287| 547| 586| 2
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547- 586 (60.72/47.42) VYCHQdQSEPLLVSPTTESSSKSSGSLeW..SLPQRGRAYGL
836- 875 (71.82/46.40) VRCHQ.YSIPTHGHPHLTANDPCLRAL.WnrSIGRRCVCGGL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 162.45| 48| 194| 137| 231| 3
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20- 69 (81.64/33.25) TPSYA.SARYPPSCLLsnLIHRQAPHQLSSSIQSVVVTTPPKPATP.AIHAF
137- 186 (80.81/115.90) TLAYSvNLQQPPAGIL..WLNTDRVYQLSHDQQKFVRMPMVGPRNPyGYFAF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 114.56| 36| 38| 705| 740| 6
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705- 740 (58.52/35.15) RDALSKLLVMVNEFVHYTNSASFELPNVPESLPLLL
744- 779 (56.04/33.39) KNVLSSEPVALKDVLAFLTAIKSEDLGVQDRWALLL
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 59.80| 20| 32| 81| 100| 10
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81- 100 (34.76/21.10) KSTTLLN...KSPIRLAE..QFHDQ
111- 135 (25.04/13.32) RGTTLASadeNGKIALWElgTSSDQ
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