<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00869
Description |
Mediator of RNA polymerase II transcription subunit 13 |
Sequence | MVTDASLTNIFVVNGVSHIRYRAYTSTCQRSTLLSCLKTQASGSNPLIQANHDLCQLNIPCTWRMTPRVNQSGDALSLELWVFWFEDRHTGIIDANQYLTELEEIKMGSFTWDKIISSKGGATSSPSPNGKASQQPRAKSLVSLPEEYKLFIKSVRNLVNRAMLSKGAIPLGDFFILQHHDTDTGLFQGSLPASITSTMVGCAYNTYVTGTDLVFRPYTRQLRIRALVNEDLDNYGLKVILSPSGEQACLTSYVSEISEQVQDETIREWSSLYNIPIQHLTAPYTSQPTQALPSLVAIRTKTNATALYPAKLVFVPTSTRQSSARMAGMDGVFSCDRGLTRDIGKDWNRWSWINEMNQSSSNNNTNMSPQDGCRIDYWSLDDSAGRIMDALAAGNPMHEFAVLKKALDQPPVPAVRSKAAASRRSSAHGTATSTTTAVDGTQNDSLLDFIMRNFSNPADEDTPMTMESALEDSATSAPYTVTPTDQHPEETPVISQDIAATDDAFGLGYSNNMFGTERWDNDMDDDFDNFDFDVTEADFDFFKSEKKQQQQQQPSCSMMELDKPEPVNDSMNVSTAAPTTTDIVIPDTIKSEPFDLSAQPVAPTPAEEITHPPQQAQSSASPMVCDTTPVASSDAGISTTAPGTVDMSICTTPDIRQHTYQQSIPHVVTTSKPGYAMDNLNMIPKDFSAVAFPMGVDDAKYMGGGKFDYKSPSNDIGASETADQDVKLNRYRPDYVPPKILVDEAKREEEDKNNIGDGKNEDDDDDDDASETGSTSTNTSSSDESDQSDASSSDVSLSSHGDEQSGNVLERIQSAQMTYIRRLLGDIKNRPKRHRVGNLVMDYDSPFPTSIMDTIQPEKMNPDDIASLDQLCQQAVWGGYPFAGELPESMSASSDGVCAREDAATIVTRQTTLIQSIRGDITHVPSLPSTCVRVVQGFKSLLEEVFSQQTPDGATPADVPDAMDSPSTTASTLVGGVSIKGPLKVQEYYQLLETTPTQSRYYGKFQVKKKRSTEPDLQSLGPPDIVVGRSDDWLEGSPEMIHVWEKIKLEPYSFKNNIRYFVLYPDNQEMSKAISTFIANLSCAYEVCNLGTHLPGRAEPFTGGIAAVPLHANTSWTTAYSDACEKLGTTLGMTNMLAQERNTTNIVIYLINPSTQLSSNLALSRAFRTLVSAYTAVYRRFGRATIHPRALAMQIIPAEHVLRMGESFTMPVFKDIAFSVYSQCHSTLQRTKVDSTRSHSLLYTPPWVIAQRVPDTIRFSFKRPLVPYPTVIVDSDAMLHMVYSFSLDRRWMITVWSDHRGELIEFAVLEIQAAVIAGKPNGSPLVQVFAEAWSRTKKLAHRTGFSWQYAIAKMGLIFESELQAWEDVLCSAGDNDEKVAIVCIDIDSPLTIDMFLSNTNNSLSAEELTAQAMSQLSERYTYSSSASSSPAPTDSPRSKENKTKSQPAMDPSTLLILLNHRMAYSRQRVNIYQGDLSMESMNELDRWMLPLSSGYLIKQNSSQEAAVSCRQPSILELHLVYNKQSRNARLALREIMKQYNALSYVNHPPSHARMHASMLPNHLVLVERLTRILLVVGS |
Length | 1578 |
Position | Kinase |
Organism | Lichtheimia corymbifera JMRC:FSU:9682 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina>
Mucoromycetes> Mucorales> Lichtheimiaceae> Lichtheimia.
|
Aromaticity | 0.07 |
Grand average of hydropathy | -0.388 |
Instability index | 48.74 |
Isoelectric point | 5.07 |
Molecular weight | 174478.86 |
Publications | |
Function
Annotated function |
Component of the SRB8-11 complex. The SRB8-11 complex is a
regulatory module of the Mediator complex which is itself involved in
regulation of basal and activated RNA polymerase II-dependent
transcription. The SRB8-11 complex may be involved in the
transcriptional repression of a subset of genes regulated by Mediator.
It may inhibit the association of the Mediator complex with RNA
polymerase II to form the holoenzyme complex.
ECO:0000256 RuleBase:RU364134
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP00869
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 528.95| 174| 193| 409| 601| 1
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409- 601 (263.83/220.37) QPPVPAVrSKAAASRRSSAHGTATSTT..TAVD...GTQNDSLLDfiMRNFSNPaDEDTPMTMESALEDSATSAP.YTVtptdqhpEETPVISQDIAATddAFGLGYSNNMF.GTERWD.....NDMDDDfDNFDFDVT....EADF...DFFKSEKKQQQQQQPSCSMmelDKPEPVNDSMNVSTAAPTTTDIVIPDtiKSEPFDLSAQPV
603- 795 (265.12/169.42) PTPAEEI.THPPQQAQSSASPMVCDTTpvASSDagiSTTAPGTVD..MSICTTP.DIRQHTYQQSIPHVVTTSKPgYAM.......DNLNMIPKDFSAV..AFPMGVDDAKYmGGGKFDykspsNDIGAS.ETADQDVKlnryRPDYvppKILVDEAKREEEDKNNIGD...GKNEDDDDDDDASETGSTSTNTSSSD..ESDQSDASSSDV
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 185.76| 58| 195| 1279| 1342| 3
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1279- 1342 (83.54/72.61) LHMVYSFSLDrRWMITVWSdhrGELIEfAVLEIQAAVIAGKPNGSPLVQVFAEAwSRTKKLAHR
1476- 1533 (102.22/62.92) LSMESMNELD.RWMLPLSS...GYLIK.QNSSQEAAVSCRQPSILELHLVYNKQ.SRNARLALR
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 148.87| 46| 58| 855| 912| 5
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855- 903 (78.08/80.73) IQPEKMNPDDIASLDQLCQQAVWGgypFAGELPESMSASS.DGVCARE..DA
914- 962 (70.79/44.46) IQSIRGDITHVPSLPSTCVRVVQG...FKSLLEEVFSQQTpDGATPADvpDA
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