<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00865

Description Uncharacterized protein
SequenceMNQQNPNLPNGQQQQLNMGMQNNIANPNWRDELPASDRNSFITQLAQALTLLSPNTSENDIYTAARNFEQTLYNNSINKNQYILAYAKKIHHIRSSLRDMMANQGGAGGNAAAAAAAAAAAASAGGGGPSNLANMIHDSQLPLNIGNLAMQQQMSPLVAQQQQQNASPHQATPASQQQQQQRQQQQQQQQNFASPLNMNQQMAAGQNQIRPNMFQPGQQQQQQQPQQPQQQQQQGQPQLQNPQQQAQLLALQRAALAAAQQQGVTSQAGGNGGGGGGGNQQQQISLNMLQSLGGALNGVNQPAAMSLSPQQMQMFLARQLAFQNQQRSQQGGQQQATAQQPAQSQPSQGTSQQPNAASMLMNMNMQQNRPGMMQQSPNFRSGVTAATLQAAASYPAAAAAALNQASMPGVSAAMLANNLTAQQQVSRPPHQPQAQPQQQQGQPQQQQQQPQQGQMTQQELLIQQIQQQHRQQLLRQQQQQQQQQQQQGGQGQGQPQQPSPRPPQQQQQQPQQQQQQPPQQPGMPQNAAAMLQNTNASPQQRQANNQRLMMMIQQRGGAAELVRQLDETVRNGRARARPVENLSQQEKNDINENMLRMKQMFDRLGELLPVFLQMTSNVEATRRLILMKHLYEEQFKLLPQQTYIVTLDQLNLLRDQLSRYFNWVRLNVSGPQMGGIQQQQQPGVSQPPSMGSQPPTTAATTVSQMPQAPQPQPPSATQAPQQQQQQHVPSPMPQQQQVVRPPVSMSQSPQQMTAEQVPTSNAMGIKRASIDLKLPPSKKQRAAANQQQQPQEAGVSSAPSPAAAQAAPSSPATMLQTGQAPPAMGGGPIATNNVSPQELQQAALARGFPADLLRVLPEQALQWSWVLTQAEKKALSLNPQSIDYLRKMLDMAVNVARRQLEQQQQQQQQQQQNVTTATETPQQQQTPVPPPSQQRTPSVTSIRSSPAMTPAAASTPATNAAATPAPPPPASASTPSMAAASRPATTPMTTPATIAATTSTATPATVATTPTTLTTTPTAATAAAVSTPMASHVATTPTISRPQLSTTPSQQQQRPGMNAENKVVNTMMYANDVLKDVASILAQKTPDDAPEKIALDVMREGTHCAYAFDASPFKEGYKDETFSLALDRGSLGKNEIIKDNEPADPSTDWYEPGMMDPGIIGMNEIMRGFEWDESGAMISS
Length1180
PositionTail
OrganismLichtheimia corymbifera JMRC:FSU:9682
KingdomFungi
LineageEukaryota> Fungi> Fungi incertae sedis> Mucoromycota> Mucoromycotina> Mucoromycetes> Mucorales> Lichtheimiaceae> Lichtheimia.
Aromaticity0.03
Grand average of hydropathy-0.799
Instability index75.59
Isoelectric point9.54
Molecular weight127791.22
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00865
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     293.99|      40|      41|     151|     191|       1
---------------------------------------------------------------------------
  151-  190 (70.29/14.70)	........QQQMsP..........LVAQQQQQNASPHQATPASQQQQQQRQQQQQQQQ
  191-  233 (54.00/ 7.88)	NfasplnmNQQM..............AAGQNQ.IRPNMFQPGQQQQQQQPQQPQQQQQ
  403-  449 (61.83/10.32)	N.......QASM.PgvsaamlannLTAQQQVSR.PPHQ..PQAQPQQQQGQPQQQQQQ
  677-  714 (58.59/ 9.31)	Q.......QQQQ.P..........GVSQP.PSMGS.QPPTTAATTVSQMPQAPQPQPP
  717-  748 (49.28/ 6.41)	T.......QA...P.............QQQQQQ...HVPSPMPQQQQVVRPPVSMSQS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     148.55|      36|      36|     975|    1010|       4
---------------------------------------------------------------------------
  307-  351 (34.87/ 7.05)	LSPQQ....MQmflArqlafqNQQRSQQGGQQQ.......AT.AqqpAQ.SQPSQGT.S
  352-  399 (35.61/ 7.37)	QQPNAasmlMN..mN......MQQNRPGMMQQSpnfrsgvTAAT...LQAAASYPAAAA
  515-  537 (33.40/ 6.40)	QQPP..................QQP...GMPQN.......AAAM...LQNTNAS.....
  975- 1007 (44.66/11.38)	...PS....MA...A......ASRPATTPMTTP.......ATIA...ATTSTATPATVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     102.80|      31|      36|     235|     268|       6
---------------------------------------------------------------------------
  235-  268 (45.59/21.49)	GQPQLQNPQQQAQLLALQraALAAAQqQGVTSQA
  273-  303 (57.21/20.31)	GGGGGGNQQQQISLNMLQ..SLGGAL.NGVNQPA
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.07|      16|      26|    1126|    1141|       7
---------------------------------------------------------------------------
 1126- 1141 (28.88/22.13)	LDRGSLGKNEIIKDNE
 1155- 1170 (31.19/24.51)	MDPGIIGMNEIMRGFE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.84|      25|      25|     801|     825|       8
---------------------------------------------------------------------------
  766-  790 (29.29/ 6.95)	KRASIDLKLP..PSKKQRAAANQQQQP
  791-  815 (36.76/11.27)	QEAGVSSAPS..PAAAQAAPSSPATML
  816-  839 (29.79/ 7.23)	QTGQAPPAMGggPIATNNV..SPQE.L
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.73|      14|      24|     908|     921|       9
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  908-  921 (24.40/13.79)	QQQQQNVTTATETP
  933-  946 (24.32/13.71)	QQRTPSVTSIRSSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     138.11|      26|      29|     588|     615|      12
---------------------------------------------------------------------------
  545-  566 (24.77/12.23)	...N..QRLMM..MIQQRG..GAAELVR...QLD
  567-  587 (25.81/13.09)	ETVR..NGRAR..ARPV.......ENLSQ..QEK
  588-  615 (38.90/31.12)	NDIN..ENMLR..MKQMFD..RLGELLPVflQMT
  616-  642 (30.15/16.68)	SNVEatRRLIL..MKHLYE..EQFKLLP...QQT
  647-  673 (18.49/ 7.03)	LD.Q..LNLLRdqLSRYFNwvRLNVSGP...QM.
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.78|      14|      19|    1015|    1028|      14
---------------------------------------------------------------------------
 1015- 1028 (23.80/12.50)	TTPTAATAAAVSTP
 1035- 1048 (25.98/14.44)	TTPTISRPQLSTTP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.09|      19|     232|     844|     862|      17
---------------------------------------------------------------------------
  844-  862 (31.11/20.60)	LARGFPADLLRVLPEQALQ
  876-  894 (30.98/20.48)	SLNPQSIDYLRKMLDMAVN
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00865 with Med15 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AELVRQLDETVRNGRARARPVENLSQQEKNDINENMLRMK
2) ALAAAQQQGVTSQAGGNGGGGGGGNQQQQISLNMLQSLGGALNGVNQPAAMSLSPQQM
3) MFLARQLAFQNQQRSQQGGQQQATAQQPAQSQPSQGTSQQPNAASMLMNMNMQQNRPGMMQQSPNFRSGVTAATLQAAASYPAAAAAALNQASMPGVSAAMLANNLTAQQQVSRPPHQPQAQPQQQQGQPQQQQQQPQQGQMTQQELLIQQIQQQHRQQLLRQQQQQQQQQQQQGGQGQGQPQQPSPRPPQQQQQQPQQQQQQPPQQPGMPQNAAAMLQNTNASPQQRQANNQRLMMMIQQRGG
4) MNQQNPNLPNGQQQQLNMGMQNNIANPNWRDELPASD
5) PQMGGIQQQQQPGVSQPPSMGSQPPTTAATTVSQMPQAPQPQPPSATQAPQQQQQQHVPSPMPQQQQVVRPPVSMSQSPQQMTAEQVPTSNAMGIKRASIDLKLPPSKKQRAAANQQQQPQEAGVSSAPSPAAAQAAPSSPATMLQTGQAPPAMGGGPIATNNVSPQELQQAALARGFPAD
6) RKMLDMAVNVARRQLEQQQQQQQQQQQNVTTATETPQQQQTPVPPPSQQRTPSVTSIRSSPAMTPAAASTPATNAAATPAPPPPASASTPSMAAASRPATTPMTTPATIAATTSTATPATVATTPTTLTTTPTAATAAAVSTPMASHVATTPTISRPQLSTTPSQQQQRPGMNAENKVVN
7) SSLRDMMANQGGAGGNAAAAAAAAAAAASAGGGGPSNLANMIHDSQLPLNIGNLAMQQQMSPLVAQQQQQNASPHQATPASQQQQQQRQQQQQQQQNFASPLNMNQQMAAGQNQIRPNMFQPGQQQQQQQPQQPQQQQQQGQPQLQNPQQQAQLLALQ
559
255
314
1
671
886
95
598
312
557
37
851
1065
252










Molecular Recognition Features






MoRF SequenceStartStop




NANANA