<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00853

Description Mediator of RNA polymerase II transcription subunit 17
SequenceMSGQDTAEQDFEPWKKLKLSFERPYKDDAGNPIPVLYDLTPEGERIYEPRESASVKLETNLRRIFLERGADFFERRDGLLSDSKPQNTAGAEQVENGEEDVAGDSDPVTKTMSVEELYAMRVEIMPHLFIALGEMTHARDLLNAVLSGTLNGQTNANAEPSSSLISATLVTIPPPIVSVQAFNAQITIGGKDEALRKAARLFKSAAESMERGRVRGEKYWVDALRIRRANWGLTPAPLPPGSATGKGADKTSKDFIISYGLEGSPAFFRRRAIAQMPISLGDSSRELVFPLRQTTRLRISILTTAESWAQPCSFASPRPASGPTDPEIVLKVAQTEVVDQEIFSLLVKEAGQLPTASARVSERLIAIDAAQGLDLVFELVDASVNMQASQSDGTGGENMCELIYHVLHVFLLRRHGLPLQDKGGVANKPSEFPLTLLQPIIDLLQYRVFCERVELELRKAVNALTAVGIPSTLSFTAVGEPGQLLVSLLSEHGKKAVGGQAVIRVDNWHTLWFTFVSPSTLTAHLSQATLTISSLPQLSQLLMDEIERFLLQRISGIGRGLCQSLGGIWFIDLNRCVAKWEGSVLNFKVFFGSDLTIGCSAFRLDATTGKQGNTQTYVSGYVSLMNWIQKIIQESARQFVLK
Length642
PositionHead
OrganismGalerina marginata (strain CBS 339.88)
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Strophariaceae> Galerina.
Aromaticity0.07
Grand average of hydropathy-0.112
Instability index36.42
Isoelectric point5.72
Molecular weight70476.68
Publications
PubMed=24958869

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00853
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     133.62|      43|     140|     346|     414|       1
---------------------------------------------------------------------------
   53-   95 (71.30/35.19)	ASVKLETNLRRIFLERGADF.FERRDGL..LSDSKPQNTAGAEQVE
  356-  401 (62.32/60.48)	ASARVSERLIAIDAAQGLDLvFELVDASvnMQASQSDGTGGENMCE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     100.18|      27|      35|     458|     488|       2
---------------------------------------------------------------------------
  458-  484 (44.73/24.17)	RKAVNALTAVGIPS..TLSFTAVGEPGQL
  494-  519 (30.68/17.76)	KKAVGGQAVIRVDNwhTLWFTFVS.PS..
  521-  541 (24.77/11.45)	......LTAHLSQA..TLTISSLPQLSQL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00853 with Med17 domain of Kingdom Fungi
Unable to open file!