<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00833

Description Uncharacterized protein (Fragment)
SequenceMVVGPGDHGLQADIIFVIEGTAINGAYLNDLKSHYVVPTLEYFSQGTIEERDYVAESTSTQYGLVIYQAADCLPNPSSDCFGPYSNPQKLLNILDKIELVGGKGESHANIAEGLATALQCFEDLQQRREPNILPQKHCILVCNSPPYLLPVMESPTFAGHTVEQLAVLLQERGIHLSVLSPRKIPALFKLYEKAGGDLQTSQTKNYAKDPRHLVLLKGYSLKERPISPTPGPIGHPTGNISSMPSSSPNQNNGSPMGTLAPCPGGATGMPQQQTPMMNSQGVQPTVFRPTQTQGVMHPNPRNTILFPQQPPQSYSSQGIMVQNRPPRWPLPMMQPQQQSRQFPNQSALIAQLTQPTMGTAVNPTALAVTGQFNQSKCLHFLNYLLSEDDCLLGYTTVQSVMSQQQQMHNMSRVPQQPGQGGSMNLPSMVGPGPGQQPGPGQSAPPPPQSNQSGTPSGQQPQTIGQQQTVAAPQQGTPPGGPGQPSAQQVCGNQQRQTIWQGVLEWIEKAKNPNDTQKLTRHVPCQVSANPRDGEPDLKADSWPQKLIMQLMPKQLIGNIGGAYLKNSKSVLFHPQNCEALESLTKVMSSGFAGCVHFTSVPSPQTCDIKVLILLYTSEKRAFLGFIPNDQAAFVDRLRKVIQHQKTTQALIRQQGGQLSGSMGAPGGGPQPGQQQTNSQQGPQGGIMMSQTNPMTMGGGQITQNVVTSAAQQMQQQVVSLGQQGAGGNQQQPGAGGPIRGGQGMMAGAPQRPPFDNIEAARQQNLAKIQHLRQTLEAAQQQELQYKSQLEVS
Length792
PositionUnknown
OrganismZootermopsis nevadensis (Dampwood termite)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Termopsidae> Zootermopsis.
Aromaticity0.05
Grand average of hydropathy-0.515
Instability index60.60
Isoelectric point8.56
Molecular weight85330.75
Publications
PubMed=24845553

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00833
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     170.52|      25|      27|     293|     317|       1
---------------------------------------------------------------------------
  256-  280 (35.12/ 8.48)	MGTLAPC..PGGATGMPQQQTPMMNSQ
  293-  315 (38.76/10.13)	QGVMHPN..PRNTILFPQQPPQSYS..
  317-  341 (32.21/ 7.16)	QGIMVQNrpPRWPL..PMMQPQQQSRQ
  467-  488 (30.95/ 6.60)	QTVAAPQ..QGTP...PGGPGQPSAQQ
  659-  679 (33.47/ 7.74)	SGSMG.A..PGGGPQ.PGQQ.QTNS.Q
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      83.64|      26|      28|     411|     436|       2
---------------------------------------------------------------------------
  422-  453 (44.78/14.40)	SMNLPSMVGPGPGQQpgpgqsAPPPPQSNQSG
  702-  727 (38.86/11.43)	TQNVVTSAAQQMQQQ......VVSLGQQGAGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.39|      16|      27|     572|     597|       3
---------------------------------------------------------------------------
  143-  159 (27.11/ 7.35)	NSPPYLLPVMeSPTFAG
  578-  593 (27.28/28.18)	EALESLTKVM.SSGFAG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      62.09|      18|      28|     516|     543|       4
---------------------------------------------------------------------------
  519-  538 (29.83/33.03)	TRHVPCQVSANPrdGEPDLK
  548-  565 (32.26/10.81)	MQLMPKQLIGNI..GGAYLK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      39.59|      11|      54|     681|     693|       5
---------------------------------------------------------------------------
  681-  693 (19.64/12.83)	GPQGgiMMS...QTNP
  740-  753 (19.94/ 6.82)	GGQG..MMAgapQRPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     170.08|      53|      59|      25|      80|       7
---------------------------------------------------------------------------
   25-   80 (84.74/68.88)	GAYLNDLKSHYVVPTLEYFSqGTIEERDYVAE..STSTQYGLVIYQAADclPN..PSSDC
   82-  138 (85.35/57.34)	GPYSNPQKLLNILDKIELVG.GKGESHANIAEglATALQCFEDLQQRRE..PNilPQKHC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.81|      14|      49|     167|     185|       8
---------------------------------------------------------------------------
  167-  185 (20.73/19.27)	VL.....LQERGIhlsvlSPRKIP
  214-  232 (22.08/ 9.35)	VLlkgysLKERPI.....SPTPGP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00833 with Med25 domain of Kingdom Metazoa


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GVLEWIEKAKNPNDTQKLTRHVPCQVSANPRDGEPDLKADSWP
2) MSQQQQMHNMSRVPQQPGQGGSMNLPSMVGPGPGQQPGPGQSAPPPPQSNQSGTPSGQQPQTIGQQQTVAAPQQGTPPGGPGQPSAQQVCGNQQ
3) QALIRQQGGQLSGSMGAPGGGPQPGQQQTNSQQGPQGGIMMSQTNPMTMGGGQITQNVV
4) QVVSLGQQGAGGNQQQPGAGGPIRGGQGMMAGAPQRPPFDNIEAARQQNLAKIQHLRQTLEAAQQQELQ
5) RPISPTPGPIGHPTGNISSMPSSSPNQNNGSPMGTLAPCPGGATGMPQQQTPMMNSQGVQPTVFRPTQTQGVMHPNPRNTILFPQQPPQSYSSQGIMVQNRPPRWPLPMMQPQQQSRQFPNQSALIAQLTQPTMGTAVNPTALAV
501
401
648
716
224
543
494
706
784
368










Molecular Recognition Features






MoRF SequenceStartStop




NANANA