<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00830

Description Mediator of RNA polymerase II transcription subunit 27
SequenceMRLQISGQFSINVRCIMETALYTALNSVKVLRSSVGEVYDTLGNGLRADHGEDGKDTKFLFELQELLSTVNINLRDVEQAVNSLSPPPGPFNLGNTAYLSQESTQDRQALYSQLVNSYKWTDKVHEYSSLAATLLSQNSLKRSYINSSTAKRRRTQTSSHNVPAQAVDTVINTIDRLFSDMSVTITRPFATNALLQHVHVLQISLGRVLKAVIAFKGLMIEWVVVKGHGETLDLWTESRHKVFRKVTENAHAAMLHFSSPTLPELAVRSFMTWFHSYITLFNDPCKRCGNHLNSSLPPTWRDLRTLEPYHEECKP
Length315
PositionTail
OrganismZootermopsis nevadensis (Dampwood termite)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Termopsidae> Zootermopsis.
Aromaticity0.08
Grand average of hydropathy-0.281
Instability index44.61
Isoelectric point8.82
Molecular weight35578.06
Publications
PubMed=24845553

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00830
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.81|      14|      25|     272|     286|       1
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  272-  286 (24.74/18.25)	TWfHSYITL..FNDPCK
  299-  314 (21.07/10.32)	TW.RDLRTLepYHEECK
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00830 with Med27 domain of Kingdom Metazoa
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