<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00829

Description F-box-like/WD repeat-containing protein TBL1XR1
SequenceMTVTMSFSSDEVNFLVYRYLQESGFQHSAYTFGIESHISQSNINGALVPPAALLSILQKGLQYTEAEISIGEDGTEQRLVESLSLIDAVMPDVVASRQNQQNQQKQQIVKTEMQDTNGEEAVTSNVAESMEVDGSIEIPPSKATVLRGHESEVFICAWNPTTDLLASGSGDSTARIWDMSDNSASPNQLVLRHCIQKGGTEVPSNKDVTSLDWNCDGTLLATGSYDGYARIWTTDGRLASTLGQHKGPIFALKWNKRGNYILSAGVDKTTIIWDAASGQCTQQFSFHSAPALDVDWQTNTSFASCSTDQCIHVCKLSVDKPIKSFQGHTNEVNAIKWDPQGNLLASCSDDMTLKIWSMKQDTCVHDLQAHSKEIYTIKWSPTGPGTPNPNMNLILASASFDSTVRLWDVDHGACIHTLTKHTEPVYSVAFSPDGKFLASGSFDKCVHIWSTQSGQLVHSYKGTGGIFEVCWNSRGDKVGASASDGSVFVLDLRKL
Length495
PositionTail
OrganismZootermopsis nevadensis (Dampwood termite)
KingdomMetazoa
LineageEukaryota> Metazoa> Ecdysozoa> Arthropoda> Hexapoda> Insecta> Pterygota> Neoptera> Polyneoptera> Dictyoptera> Blattodea> Blattoidea> Termitoidae> Termopsidae> Zootermopsis.
Aromaticity0.08
Grand average of hydropathy-0.290
Instability index38.06
Isoelectric point5.15
Molecular weight54035.74
Publications
PubMed=24845553

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00829
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     337.57|      33|      39|     213|     245|       1
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  158-  193 (49.30/24.19)	WNPTTD.........LLASGSGDSTARI..W.D.MS.DNSASP.NQlvlrH
  213-  245 (59.03/30.23)	WNCDGT.........LLATGSYDGYARI..W.T.TD.GRLASTLGQ....H
  254-  287 (43.57/20.62)	WNKRGN.........YILSAGVDKTTII..WdA.AS.GQCTQQFSF....H
  296-  328 (39.50/18.09)	WQTN.T.........SFASCSTDQCIHVckL.S.VD.KPIKSFQG.....H
  337-  370 (52.00/25.87)	WDPQGN.........LLASCSDDMTLKI..W.SmKQ.DTCVHDLQA....H
  379-  421 (45.49/21.82)	WSPTGPgtpnpnmnlILASASFDSTVRL..W.D.VDhGACIHTLTK....H
  430-  462 (48.68/23.80)	FSPDGK.........FLASGSFDKCVHI..W.S.TQsGQLVHSY.K....G
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      70.13|      23|      44|      64|      87|       2
---------------------------------------------------------------------------
   64-   87 (32.17/28.99)	TEAEISIGEDGTEQRLVESLSlID
  111-  133 (37.96/28.86)	TEMQDTNGEEAVTSNVAESME.VD
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00829 with Med16 domain of Kingdom Metazoa
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