<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00819

Description Uncharacterized protein
SequenceMATDFWASSHHKRWVVDRASVKRARAEDLLYVDDPEYLDFLAIFFANCISRLGKKLQLRQRVIATATVFFRRFYLKNSYCETDPFLVIAACCYVAAKAEESPLPIKNVVSDARFVFSQEMYGIKTFPSDTSKLAEMEFYLVDDLECDLTIFHPYRTLMTLCYKEGSNVGAGGGADGNIEAGELGAGIDDGQRYWGTGEGRLELHEGALQMAWFIINDTYRSDLCLLYPPHLIAIAAIYLALVLHTPTRTLIQSQTAPGSSSASATGSACSGPTTANPTPAPVRRSSRQASNASSSSSKKNQQHHQPQDFVGFMASLNVSMPLIATIAQEIISLYTLWDRYKEDSPTSTSSLDSSAKGSFTSNQGRHNSPFTTGTKRSATGTNTSRSGSVTTNVSASAGTGSHAGTPMDIVREDGVEITPVFLVKVLLKMREGKWTDLAARSGLGEGGDGGGNGPRAVNKILGRTQAAG
Length468
PositionKinase
OrganismJaapia argillacea MUCL 33604
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Jaapiales> Jaapiaceae> Jaapia.
Aromaticity0.09
Grand average of hydropathy-0.231
Instability index44.50
Isoelectric point7.13
Molecular weight50621.42
Publications
PubMed=24958869

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
cyclin-dependent protein serine/threonine kinase regulator activity	GO:0016538	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00819
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     137.78|      35|      97|     153|     249|       1
---------------------------------------------------------------------------
  162-  196 (61.04/31.45)	YKEG.SNVGA...GGGA.DGNI..EAGELGAGIDDGQRYWGT
  257-  287 (28.62/84.49)	..PGsSSASA...TGSAcSGPT..TANPTPAPVRRSSR....
  340-  379 (48.12/ 6.01)	YKED.SPTSTsslDSSA.KGSFtsNQGRHNSPFTTGTKRSAT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00819 with CycC domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) DLAARSGLGEGGDGGGNGPRAVNKILGRTQAAG
2) SASATGSACSGPTTANPTPAPVRRSSRQASNASSSSSKKNQQHHQPQDFV
3) SPTSTSSLDSSAKGSFTSNQGRHNSPFTTGTKRSATGTNTSRSGSVTTNVSASAGTGSHAGTPMDIV
436
261
344
468
310
410










Molecular Recognition Features






MoRF SequenceStartStop




1) PRAVNKILGRTQAAG
454
468