<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00813

Description Uncharacterized protein
SequenceMDSTTSTAVASLETKLQALTDLQSRLQALRQVPTALLRPPSTLGAFTSVSSSLRQQCQDLKDIAGVVTSEKVQEALKAARDSEKADKSGLTFNGRRENRKRRRLPSPESPQPYNPFQPKSPSLFPISDTHPSPLERDNLPAFIRKFNRSHSSKLHIWSSLRSRRQAKISSPVVVRFLVPEVLTAFITTTSTDNTEDRSLVVEGVTVFGPRENKPPHSQSEYMVYQKLSQQIAKMLQSHPRVSFQSLMGLLSSYEGLFVDRCTVCQRVLSTEEHVPPVARLWIDQLAPTSACSSSAEGDTERGNGAKDKGVDDGKRARWEPRHPTCLQG
Length328
PositionTail
OrganismJaapia argillacea MUCL 33604
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Jaapiales> Jaapiaceae> Jaapia.
Aromaticity0.05
Grand average of hydropathy-0.583
Instability index74.66
Isoelectric point9.59
Molecular weight36462.82
Publications
PubMed=24958869

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00813
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      95.82|      26|     105|     105|     131|       1
---------------------------------------------------------------------------
  105-  131 (47.56/31.13)	PsPESPQPYNPFQPKSPSLFPISDTHP
  214-  239 (48.26/27.37)	P.PHSQSEYMVYQKLSQQIAKMLQSHP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.90|      41|     136|      11|      51|       2
---------------------------------------------------------------------------
   11-   51 (67.02/35.26)	SLETKLQALTDLQSRLQALRQVPTAL.LRPPSTLGAFTSVSS
  149-  190 (64.87/33.94)	SHSSKLHIWSSLRSRRQAKISSPVVVrFLVPEVLTAFITTTS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00813 with Med27 domain of Kingdom Fungi


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) CSSSAEGDTERGNGAKDKGVDDGKRARWEPRHPT
2) KVQEALKAARDSEKADKSGLTFNGRRENRKRRRLPSPESPQPYNPFQPKSPSLFPISDTHP
291
71
324
131










Molecular Recognition Features






MoRF SequenceStartStop




1) LPAFIRKFNRSHSSKLHIWSSL
139
160