<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00806
Description |
Mediator of RNA polymerase II transcription subunit 5 |
Sequence | MSIADLTRNCFQSGVSAPRWVKLCQLYVSKNGIESTPDVEHQISNSVLILYRSYPGEPDLVEYFRQALQESLVSLPVFVSTFLQAAFSPEIRTSASLDMLCRVALDAHYSSNAPPVGSVVPVGATSAAIMATVKDALSLLRSASTLPPSHFHQLSTSASELATLLISCITDLSQVPVAQAMVHLSEVNYLLQTLPLSNTARQIFQTYSLSLDMVAGADVKAAHEAQMMQNINASTYGKGEFSDATSNSDIVSFGLLLHHLVHNRGAKYGSGSGGDPVVLLLETLRWSSWTPAVFYTQLISSAFTCLSQTSGNKIWLWVSFIAGRLPSMISQFEATIKSDSLVNADWRSALQTALSNVLRRSELMAQCDHLIQQLNLETPVLRSASGELLAGLINRSVIDSSFAVGIDVRTAEDSIPRLKTEARDAGHPELQPYITFKISLDASIEEVKLLASRVWLDPTSHETFARVIMEQAAKLTTTLDVESMSHLCKLLLQHETALDIISLHEPISSLVYHALKFIETYDCETVGDPQTAVGHLGDVVLFAQYTMEKYHLDMDTFAHGANAVSSQFIKTVRNIYGLDELTREEMVAFNSWFKTLFDSTSEGIEDSILRSTNPKILLRLAATLVSHAIIARMASKIDNDTLHNGVSFFLSPLLNWTLVGVVKSLLREIKTKGFNAPVHFDILQTILLSPSCPPTVHCLCGAQILTQITLLNVRVQTASSEFKFDVRAVRQLAARAVGYREPATMPTPKQQGLWPNQPRNAILMAIGTARGGKAPHLDVKHCLDVTPPAKFLQLLWSELVVAAGLGEMDMCRRIATYVLTMPQPPQTPPLLPTFLYIVLPSLIVAIDSQNVGEQTLGTELLFNIVTSSLTAALHLEWALRAVGGEPLSPLGGQPSTIMARRLGVNLRMKKNSRTSRSLLHKLTSSQPFMANFPHFMSEINI |
Length | 941 |
Position | Tail |
Organism | Pleurotus ostreatus PC15 |
Kingdom | Fungi |
Lineage | Eukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes>
Agaricomycetidae> Agaricales> Pleurotaceae> Pleurotus.
|
Aromaticity | 0.07 |
Grand average of hydropathy | 0.128 |
Instability index | 49.46 |
Isoelectric point | 6.28 |
Molecular weight | 103168.65 |
Publications | PubMed=24958869
|
Function
Annotated function |
Component of the Mediator complex, a coactivator involved in
the regulated transcription of nearly all RNA polymerase II-dependent
genes. Mediator functions as a bridge to convey information from gene-
specific regulatory proteins to the basal RNA polymerase II
transcription machinery. Mediator is recruited to promoters by direct
interactions with regulatory proteins and serves as a scaffold for the
assembly of a functional preinitiation complex with RNA polymerase II
and the general transcription factors.
ECO:0000256 RuleBase:RU364142
|
GO - Cellular Component | mediator complex GO:0016592 IEA:InterPro
|
GO - Biological Function | transcription coregulator activity GO:0003712 IEA:InterPro
|
GO - Biological Process | regulation of transcription by RNA polymerase II GO:0006357 IEA:InterPro
|
Interaction
Repeat regions
Repeats |
>MDP00806
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 300.10| 102| 136| 684| 799| 1
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684- 799 (147.18/127.80) QTillSPSCPPTVHCLCGAQILTqITLLNVRVQTASSEFKFDV.....RAVRQL..AARAVGyREPATmPTpkqqGlwpNQPRNAILMAIGTA.RGGKAPHL..DVKHCLDVTPP..AKFLQLLwSEL
826- 939 (152.92/90.26) QT...PPLLPTFLYIVLPSLIVA.IDSQNVGEQTLGTELLFNIvtsslTAALHLewALRAVG.GEPLS.PL....G...GQPSTIMARRLGVNlRMKKNSRTsrSLLHKLTSSQPfmANFPHFM.SEI
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
4| 158.00| 38| 138| 137| 174| 5
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111- 142 (26.91/12.45) .SNAPPvgSVVPVGATSAAIMATV.............kdaLSLLRS
143- 174 (49.08/29.08) ASTLPP..SHFHQLSTSASELATLLISCI.TDLSQ...........
287- 319 (42.71/24.30) SSWTPA..VFYTQLISSA.......FTC....LSQtsgnkIWLWVS
322- 359 (39.30/21.74) AGRLPSmiSQFEATIKSDSLVNADWRSALqTALSN.......VLR.
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
2| 73.45| 24| 32| 623| 648| 6
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623- 648 (34.17/31.19) TLVshAIIARMASKIDNDTLHNGVSF
657- 680 (39.27/27.77) TLV..GVVKSLLREIKTKGFNAPVHF
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No. of Repeats|Total Score|Length |Diagonal| BW-From| BW-To| Level
3| 88.44| 22| 34| 512| 533| 7
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471- 498 (21.50/13.33) .QAAKLTTTLDvesmshlCKLLLQHETAL
512- 533 (40.26/32.32) YHALKFIETYD.......CETVGDPQTAV
550- 564 (26.68/18.57) YH.......LD.......MDTFAHGANAV
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