<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00805

Description Mediator of RNA polymerase II transcription subunit 20
SequenceMGFTGLARWVNAPVHGSLSIISNNILENYNGKIVGNWNITIKAFRLPMPPFRDMPVPDRIMCTLQMNDSVFVLVEDSVSPERAMVVDPANSGDSFLQSCTHYRTTLVTVRPPMALEQLISQLKSRWVAARQSTSGGAQRNQAMSSQQLTIEGMVFAIGTDWLVRVGNVMLSTREMKGLIIEAEYLPVGRLHSPTVDGTSELLSNMLTALLPPRPDAKTLAVTSNDSQWAGVLSVREDDEAARQQPPKESDVPVEDEDDIYAYGDDPPPPTKGDWFGIDRDRRSAYLVMGGLRSEGLL
Length297
PositionHead
OrganismPleurotus ostreatus PC15
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Pleurotaceae> Pleurotus.
Aromaticity0.06
Grand average of hydropathy-0.234
Instability index63.14
Isoelectric point4.93
Molecular weight32745.89
Publications
PubMed=24958869

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00805
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.04|      15|      21|     237|     257|       1
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  243-  257 (27.51/17.26)	QQPPKESDVPVEDED
  266-  280 (31.53/ 9.58)	PPPPTKGDWFGIDRD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      51.39|      16|      21|     198|     215|       2
---------------------------------------------------------------------------
  198-  215 (23.49/19.68)	TSEllSNMLTALLPPRPD
  222-  237 (27.90/16.80)	TSN..DSQWAGVLSVRED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      29.84|       9|      21|     157|     166|       3
---------------------------------------------------------------------------
  157-  166 (13.43/11.67)	IGTDWLvRVG
  180-  188 (16.41/ 8.98)	IEAEYL.PVG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00805 with Med20 domain of Kingdom Fungi
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