<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00798

Description Uncharacterized protein
SequenceMSSKQRRKEPATNLPVYESLPPTWLPKTHKSGDLGYPGFYPPRPGQDEDVLSENNVKNGFTAEPVVSAETFTAQPFVKINDDSISKLEDLMDAVFSRRNEQLPPIPASTFRMPSRVTLTDAKRQSWFDDLANPDVPLYKLGKNVPHGAKGHDLLDLLHSSNVAIPRAIWLLRVLGANETAGLRNRPSYNPTSYSIEWTGVMTSYVKKQLLAIALPSAPRHGMNMNIKQNFKGVLADADSRERWISRFTYCLQLLRRFYSEGLVDHRTFLTWLVQQMATCNLAQAGFVSKLADEYSEGMICSRALARHFADACLSRLSEIRASVPAQYLANTETLLRSLLQRMCLTLPDSFISPRMWIMHASLLQYAFVENVLDSFTDQRVEQKAQNVRQLLATNFNDVRRRNQAMLFCNLPPRAPTGLGSAVTEVQLLNSISSATDIKSLHFFTFDTPHDPAFSDKLDRLLTWSVSPFQFGEHRPFAAVTLIREWRDRVLERAHRRHFPPPSEFLQDHLFEWLDTSEVAGDTENIRAVALIFGKLVKHELFSYAEYLQRLIARGETGLLQTDNPVSRHRSFLRWIPIYNSEPSLASQRKVTLYGPRTRDTPECLNEREIRKEIRALLPELFGAELQAPPISTSELLSQCPTLISASRFEQVRTFKQWLMPILRKAIVSQSQDDSKRTMLYKSYSLAVELMTHAQCFHTILDLTFVVLAHPASVDLISSSIDTLQRFHLIWICLDVMDSICSALYSAHLFWKAQGIQSRKLVALLLKFDDSRHLETSARDHITADINTYTLALQPETALVSTQMPDVVQDISRLANDLSNDAPAMLANGLWFKYRSIHDWGGKVWDDTVTSLRLADPMDRQTFSMRCADFLLQIDSHLPYGLDDPVLQWLLGHGRTILLELSADIWDALTTVLLFLSVHGALKAPTIFEGLILPTWQSAAHISSAEEEQALSPILLASLNLFERLMFSEAANDDGTPPSNLLEIQCIRTRREEFYLSPKFYSLLSSVPVLLALEHNSHVSEEVRQRTGLIRTSLCQQQSFRQGVYRDLDVVRQTFEQSIVPGGMCEKFAEQIAEALQEALCNTRDALLSPWKLAATAIQMKLILRQMGKTTFSENTRQSAKHDLDRLIKAIFHHAVSAEQACVMADMAKGADPEVVSEFMHNGVQTLTIVLNGPGLASGGLVDQSRRAGEVLRVLAYIAEPFRKEGNPLPQLNQDAYDKLFFAINKSIASLAKELNATDTDDALIPSESTAWAILLARLLQFLLGFHGQCSPSVKAASSETSSSLATLVLLHSTRTNLDVVAYTLLLDTLYYLLDEVAMDPKASTFDPCFNYPSFSISDLPPDLPAEYRIQLSRLLSCFPANSSVENLALAHRDANGTLVIDGPVLNRPWEWIENLGEPPTLDEAKEKEEKDRQGTKYIVKNSGSLSLENFAARVTGDGILPEASSKDLRAFEDRLSGDSVFSRDWQESRVGSDLDTLVGSRSRGEGDQEYGSKMRRPTPRASPASSVLSRSSAHQSSTTSMRRPSPSEVSINRHSGSSMGEPIDVDSVMSSKRKTSTASDDDIEIIEGPVPSQTVSKKKGRTAGKTKARKR
Length1591
PositionKinase
OrganismPleurotus ostreatus PC15
KingdomFungi
LineageEukaryota> Fungi> Dikarya> Basidiomycota> Agaricomycotina> Agaricomycetes> Agaricomycetidae> Agaricales> Pleurotaceae> Pleurotus.
Aromaticity0.08
Grand average of hydropathy-0.252
Instability index51.32
Isoelectric point6.23
Molecular weight178214.76
Publications
PubMed=24958869

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00798
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     162.10|      43|      44|    1454|    1497|       1
---------------------------------------------------------------------------
 1410- 1450 (29.35/12.38)	..........KDRQGTKyivknSGSlSLENF.AARVTGDGiLPEASSKDLRA
 1454- 1497 (71.22/45.17)	RLS.GDSVFSRDWQESR.....VGS.DLDTLvGSRSRGEG.DQEYGSKMRRP
 1500- 1542 (61.52/34.46)	RASpASSVLSRSSAHQS.....STT.SMRR..PSPSEVSI.NRHSGSSMGEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     121.61|      34|      47|     449|     482|       3
---------------------------------------------------------------------------
  449-  482 (63.31/35.46)	HDPAFSDKL.DRLLTWSVSPFQFGEHRPFAAVTLI
  497-  531 (58.29/32.07)	HFPPPSEFLqDHLFEWLDTSEVAGDTENIRAVALI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     119.46|      35|      39|     810|     848|       4
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  810-  848 (55.75/47.22)	IsRLANDLSNDAPAMLANGLWFKYRSIHDWGgkvWDDTV
  851-  885 (63.71/40.64)	L.RLADPMDRQTFSMRCADFLLQIDSHLPYG...LDDPV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     167.00|      47|      84|     253|     310|       5
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  253-  304 (66.68/57.02)	LLRRFYSE...GLVDhRTFLT...WLvqqMATcNLAQAGFVSKLADEYSEGMI.CSRA......L
  334-  391 (59.00/35.76)	LLRSLLQRmclTLPD..SFISprmWI...MHA.SLLQYAFVENVLDSFTDQRV.EQKAqnvrqlL
  652-  685 (41.32/21.18)	................RTFKQ...WL...M...PILRKAIVSQSQDDSKRTMLyKSYS......L
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00798 with Med12 domain of Kingdom Fungi
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