<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00790

Description Uncharacterized protein
SequenceMDPEGKKFGGGPRELTGAVDLISHYKLLPHHEFFCKRSLPLSISDTHYLHNVVGDTEIRKGEGMQLDQLIQNTSYSRESNIRIQPFDLDVLREAFQFKETTPVDLPSAEKGTPTIAVKSKSESKDKERKHKKHKDKDKEKDKEHKKHKHRHKDKDRSKDKDKEKKKDRSGHHDSGGDHSKKHHEKKRKHDGDEDLNDVHKHKKSKHKSSKIDEIGAIKVAG
Length221
PositionHead
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.04
Grand average of hydropathy-1.507
Instability index40.45
Isoelectric point9.47
Molecular weight25485.32
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro

GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00790
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.90|      19|      19|     140|     158|       2
---------------------------------------------------------------------------
  155-  174 (25.29/ 6.99)	DRSKdKDKEKKKDRSGHHDS
  193-  211 (27.60/ 8.34)	EDLN.DVHKHKKSKHKSSKI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.93|      12|      36|     143|     154|       3
---------------------------------------------------------------------------
  143-  154 (22.90/ 8.29)	EHKKHKHRHKDK
  177-  188 (22.03/ 7.71)	DHSKKHHEKKRK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00790 with Med19 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KETTPVDLPSAEKGTPTIAVKSKSESKDKERKHKKHKDKDKEKDKEHKKHKHRHKDKDRSKDKDKEKKKDRSGHHDSGGDHSKKHHEKKRKHDGDEDLNDVHKHKKSKHKSSKIDEIGAIKVAG
98
221










Molecular Recognition Features






MoRF SequenceStartStop




1) KERKHKKHKDKDKEKDKEHKKHKHRHKDKDRSKDKDKEKKKDRSGHHDSGGDHSKKHHEKKRKHDGDEDLNDVHKHKKSKHKSSKIDEIGAIKVAG
126
221