<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00789

Description Uncharacterized protein
SequenceMELLEPVHPTRDSLSGFSSPGSFRVGYDRARSSHLPGIVEEGGGEKVYVAVGKSVEKAVDLLQWSIKLFGKKQICILHVHQPSSVIPTLLGKLPASQANAEVVSAHRREERELTKKLLENCLAICHKAKVEASIITTECEQVHKGIVELINRHGARKLIMGAVPESCMKVKKSNNKANSVAKDAPLFCEIWFINKGKHVWTREACERPSLLPPSDHSLGASNETLRSKSLRYSKSILPFDPEYHRSSSTAGVSCARISGWVQSESTCPEEPILHARSSSANTCFPRSIQNSFGTISSSSGTSTERRVSLDSDSKVEEDHLYCQLAELRIEAEASRKKAFEELLRRKKLESQILQVISKVKAFDSAYANEVKRGVEAEDALRNIIEEEEKLLNEKEEITKELQRTMRNVALLDNRAQEANRRQDEAAGELKLIQTSIASLRQEKQRIRRQKMEAVHWLERWKNRGHVAAPNCNEFLGLVEELPELAEFSLSDLQTATCNFSETFKLRQGGYGCIYKGEMLGRTVAIKKLHPHNTQGQSEFQKEVQVLGKLQHPHLVTVLGACSEAGSLVYEYLPNGSLHDGLFRRSSISPLTWKVRARIIAEVSSALCFLHSSKPEKIVHGDLKPQNILLDSELSCKICEFGMSRLVTDDTLYSPSFRRGTEPKSAFPYTDPEFHRVGVLTTKSDVYSFGVIILQLLTGRPPVGLVGEVRRMMSCGKLASILDPAAGEWPTFVSRRLVDLGLQFCELSSRERPELTPALVRELEQLHVSEERPVPSFFLCPILQEIMHDPQVAADGFTYEGEALRGWLENGHETSPMTNLKLSHLNLTPNHALRLAIQDWLCKS
Length843
PositionTail
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.06
Grand average of hydropathy-0.365
Instability index58.55
Isoelectric point7.95
Molecular weight94327.77
Publications
PubMed=24837971

Function

Annotated function Functions as an E3 ubiquitin ligase. 
GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:InterPro
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00789
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     104.02|      35|      46|     313|     356|       1
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  313-  347 (57.89/46.14)	SKVEE.DHLYCQLAELRIEAEASRKKAFEE...LLRRKK
  357-  395 (46.13/21.31)	SKVKAfDSAYANEVKRGVEAEDALRNIIEEeekLLNEKE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     152.85|      44|      47|     214|     258|       2
---------------------------------------------------------------------------
  205-  253 (68.36/46.10)	CERPSllppSDhSLGASNETLRSKSLR...YSKSILP..F.DPEYHRSSSTAGVS
  254-  302 (63.29/37.56)	CARISgwvqSE.STCPEEPILHARS.S...SANTCFPrsI.QNSFGTISSSSGTS
  648-  675 (21.20/ 7.21)	.................DDTLYSPSFRrgtEPKSAFP..YtDPEFHR........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.58|      22|      25|     687|     711|       3
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  687-  711 (30.46/26.03)	SFGVI..ILQLLTGRPPVgLVGevRRM
  713-  736 (37.13/20.35)	SCGKLasILDPAAGEWPT.FVS..RRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      79.56|      25|      25|     400|     424|       6
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  400-  424 (40.35/28.61)	ELQRTMRNVALLDNRAQEANRRQDE
  428-  452 (39.21/27.59)	ELKLIQTSIASLRQEKQRIRRQKME
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00789 with Med32 domain of Kingdom Viridiplantae
Unable to open file!