<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00785

Description Uncharacterized protein
SequenceMARERVEKASISETQSETLATSDVRASVPPSVDNTPSSTDGSSFTAQGASSSPVPVTPVATGGNLQSESVSELSALTVMPSSVNTNLDEVQTTENPVSGSCEVTAATVDIAIEPMDKSNFLGQYNSSSANQAPEQEKEEAGKDVVKSEKVNSISLEEKTVSQEPLTYADKLEAKNAFKALLESANVGSDWTWDQAMRVIINDRRYGALKTLGERKQAFNDYLGQKRKQEADNRRSRQKKAREEFKKMLEESGEMTSSTRWSKAMTMFENDERFKAVEREKERRELFDNYLEELKIKEQAKTNEERKRNLVEYRKFLESCDFIKASTQWRKVHDRLEADERCSRLETMDRLNYFNDYIHDLQKEEEEQRKIQKEEMRKTERKNRDEFRKLLEEHVADGTLTSKTHWRDYFLKVKDLPAYLAVASNTSGPTPKDLFEDVAEELQKQYHEDKTRIKDTVKLKKVALASTWTLEDFKVAVLEDVSHPPVSEVNLKIIFNELLERAKEKEDKEAKKRKRVAEDFLNLLYSIKDITASSKWETCKELFEGSREFSSIGDESICKEIFEKCVAQLKEHAKENERKRKEEKQAKKEKERDERDRRKTKHRRDKERGHEREKEHIKMEEAETENVDITEDHFYDDNKRLGNDNNKKQRKKHHDSMDDANEIEKDRSKSSHRHSSDHKKSRRRASTPDSDGESRHKRHKRDHRNGSRRNGDNGDLEDGEFGEDGEGR
Length727
PositionUnknown
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.06
Grand average of hydropathy-1.255
Instability index48.92
Isoelectric point6.08
Molecular weight84281.33
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00785
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     472.24|      66|      66|     173|     238|       1
---------------------------------------------------------------------------
  173-  238 (99.41/58.65)	AKNAFKALL.ES....AN.VGSDWTW.DQAMRVIINDRRYGAL..KTLGE.RKQAFNDYLGQ.KRKQ.EADNRRSRQK
  240-  306 (87.14/50.41)	AREEFKKMLeES....GE.MTSSTRW.SKAMTMFENDERFKAV..EREKE.RRELFDNYLEElKIKE.QAKTNEER.K
  308-  373 (86.88/50.23)	NLVEYRKFL.ES....CDfIKASTQW.RKVHDRLEADERCSRL..ETM.D.RLNYFNDYIHD.LQKE.EEEQRKIQKE
  382-  451 (57.81/30.71)	NRDEFRKLL.EEhvadGT.LTSKTHWrDYFLKV.KDLPAYLAVasNTSGPtPKDLFEDVAEE.LQKQyHEDKTR....
  453-  514 (64.68/35.33)	.KDTVK..L.KK....VA.LASTWTL.EDFKVAVLEDVSHPPV..SEV.N.LKIIFNELLER.AKEK.EDKEAKKRKR
  538-  602 (76.33/43.15)	CKELFEGSR.EF....SS.IGDESIC.KEIFEKCVAQLKEHAK..ENERK.RKEE.KQAKKE.KERD.ERDRRKTKHR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      98.70|      20|      20|      11|      30|       2
---------------------------------------------------------------------------
   11-   30 (32.99/21.97)	ISETQSE..........TLATSDVR..A.SVPP
   32-   53 (26.07/15.85)	VDNTPSS..........TDGSSFTAqgA.SSSP
   62-   80 (22.47/12.66)	GGNLQSE..........SV..SELS..AlTVMP
   87-  114 (17.17/ 7.97)	LDEVQTTenpvsgscevTAATVDI.....AIEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     133.26|      24|      24|     669|     692|       3
---------------------------------------------------------------------------
  607-  629 (31.18/15.59)	RGH.EREKEHIK..MEEAETEN.VDIT
  635-  658 (32.68/16.74)	DDN.KRLGNDNN.KKQRKKHHD.SMDD
  669-  692 (41.52/23.54)	SSH.RHSSDHKK.SRRRASTPD.SDGE
  693-  719 (27.87/13.05)	SRHkRHKRDHRNgSRRNGDNGDlEDGE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00785 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HAKENERKRKEEKQAKKEKERDERDRRKTKHRRDKERGHEREKEHIKMEEAETENVDITEDHFYDDNKRLGNDNNKKQRKKHHDSMDDANEIEKDRSKSSHRHSSDHKKSRRRASTPDSDGESRHKRHKRDHRNGSRRNGDNGDLEDGEFGEDGEGR
2) MARERVEKASISETQSETLATSDVRASVPPSVDNTPSSTDGSSFTAQGASSSPVPVTPVATGGNLQSESVSELSALTVMPSSVNTNLDEVQTTENPVSGSCEVTAA
3) NDYLGQKRKQEADNRRSRQKKAREEFKKML
4) NFLGQYNSSSANQAPEQEKEEAGKDVVKSEK
571
1
219
119
727
106
248
149










Molecular Recognition Features






MoRF SequenceStartStop




1) EDGEF
2) RHKRDHR
716
697
720
703