<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00783

Description Uncharacterized protein
SequenceMSAGQAGQTMSAISSMNLSQTGMPHSSSAMPNSSNFQSSNPTSPLPSVHGIGSPAQSAIEPSTVASLSPVKSSDISGNGQQSTTRINLSTRDNAISSLRQLCCKIILTGLEFNLKPVTHSEIFHHMLNWMVNWDQRQHGVDESDGVKSWRPDKALTEWLHSCLDVIWLLVDENKCRVPFYELLRSGLQFIENVPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPTISVEPVANLRYSPITYPSVLGEPLHGEDLANSIQRGSLDWERALRCIRHALRTTPSPDWWKRVLLMAPCYRNPAHGPTPGAVFTSSMICEATIDRIVELLKLTNSEVNCWREWLVFSDIYFFLVKSGCIDFVDFVDKLVSRLTEGDQHVLRTNHVTWLFAQIIRVEFVMNALTNDARKVETTRKIISFHREDRNSDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRNVTKGDRMIDYMNMDDRSIGMFWVVSYTMAQPACETVVNWLSSGGVSELLPGANMQSNERLMVMREVSPLPMSLLSGLSLNLCSKLVLQLEDSLFAGQVIPSIAMVETYCRLLLIAPHSLFRSHFTHLAQRYPSLLSKPGVTLLVFEILNYRLLPLYRYQGKSKSLMYDVTKIVSTLKGKRGDHRVFRLAENLCMNLILSLRDFFSVKREGKGPTEFTETLNRVTIITLAIIIKTRGIADADHLLYLQTMLEQIMATSQHTWSEKTLRYFPPLLRDALIGRMDKRGLAIQAWQQAEATVIHQCTQLLLPTGDPTYYLTYINHSFPQHRQYLCAGAWILMHGHPEGINNEKLARALREFSPEDVTANIYTMVDVLLHHIHVELQHGHSLQDLLLKTCANLAFFVWTHELLPLDILLLALTDRDDDPHALRIVISLLDRQELQQRVKMFIMNRGPPEHWLFSGTFKRLDLQKALGNHLSWKDRYPTFFDDIAARLLPVIPLIVYRLIENDAMDHADRVLAVYSQFLAYHPLRFTFVRDILAYFYGHLPGKLIVRILNVLDLNKIPFSESFPQHISSSNPVMCPPPEYFATLLLGLVNNVLPPLNTNSKYGAVGDGLCNSVRNPNTKTPATSQSGATNASEGQKAFYQIQDPGTYTQLVLETAVIELLSLPVTPSQIVSSLVQIVVNIQPTLVQSSNGLHGASNSVGQGSVLPTSPSGGSTDSIGASRSTPSASGINTANFVSRSGYTCQQLSCLFIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLTDGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLKPITSVAMLRIAFRIMGPLLPRLANAHSLFSKTLSLLLNTMAEVFGRNSQPSTPVEASEITDLIDFLHHVIHYEGQGGPVQANSKPRPEVLALCGRAAENLRPDIQHLLSHLKPDTNSSIYAATHPKLVQNPS
Length1465
PositionTail
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.08
Grand average of hydropathy-0.089
Instability index41.97
Isoelectric point6.74
Molecular weight164480.19
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00783
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     392.33|     123|     181|      44|     193|       1
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   44-  193 (188.86/175.75)	PLPSVHGIGSPAQSAIEPSTVASL..SPVKSSDISGNGQQSTTRINlSTRDNAISSLRQLCCkiiltgLEFNLKPVTHSEIFHHMLNWMVNWDQRQHGVDES........................DGVKSWRpdkaltEWLhsCLDVIWLLvdenkcrvpfyeLLRSG.LQFIENV
  227-  376 (203.48/129.85)	PTFGTHRILSQTTPTISVEPVANLrySPITYPSVLGEPLHGEDLAN.SIQRGSLDWERALRC......IRHALRTTPSPDWWKRVLLMAPCYRNPAHGPTPGavftssmiceatidrivellkltnSEVNCWR......EWL..VFSDIYFF............LVKSGcIDFVDFV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.20|      36|     539|     833|     869|       2
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  833-  869 (58.44/39.29)	EKLARALREFSPEDvTANIYTMVDVLLHHIHVELQHG
 1375- 1410 (64.76/39.59)	EVFGRNSQPSTPVE.ASEITDLIDFLHHVIHYEGQGG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     169.73|      45|     181|     945|     990|       3
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  592-  638 (59.18/30.52)	.TYCRLLLiapHSLFRSHFThLAQRYPSLLSKPGVTLL.VFEILNYRLL
  945-  989 (80.82/49.64)	GTFKRLDL...QKALGNHLS.WKDRYPTFFDDIAARLLPVIPLIVYRLI
 1134- 1155 (29.73/12.93)	GTYTQLVL...ETAVIELLS.................LPVTP.......
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.13|      12|     184|    1241|    1254|       5
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 1241- 1252 (23.89/ 8.12)	CGLLLAQLPPDF
 1426- 1437 (22.24/ 6.80)	CGRAAENLRPDI
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     321.40|      76|     269|     725|     802|       8
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  725-  800 (130.50/88.93)	ADHLL..YL.QTMLEQIMA..TSQHTWSEKTLRYFPPLLRDALIGR.MDKRGLAIQAWQQAEATVIHQCTQLLLPTGDPTYY
  997- 1070 (102.57/67.15)	ADRVLavY......SQFLAyhPLRFTFVRDILAYFYGHLPGKLIVRiLNVLDLNKIPFSESFPQHISSSNPVMCPP..PEYF
 1071- 1133 (88.33/56.04)	ATLLL..GLvNNVLPPLNT..NSK.........Y..GAVGDGLCNS.VRNPNTKTPATSQSGATNASEGQKAFYQIQDP...
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.91|      18|     783|     482|     504|       9
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  482-  504 (27.34/28.48)	WWrnVTKGDRMIDYMnmdDRSIG
 1268- 1285 (34.57/19.01)	WW..LTDGKRSLGEL...DSAVG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.63|      16|     414|     927|     944|      10
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  927-  944 (30.75/21.23)	RVKMFIMnrGP..PE....HWLFS
 1342- 1363 (22.88/ 9.52)	RIAFRIM..GPllPRlanaHSLFS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      80.06|      24|    1151|      20|      43|      13
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   20-   43 (45.87/35.29)	QTGMPHSSSAMPNSSNF..QSSN.PTS
 1170- 1196 (34.19/23.83)	QPTLVQSSNGLHGASNSvgQGSVlPTS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00783 with Med23 domain of Kingdom Viridiplantae
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