<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00776

Description Uncharacterized protein
SequenceMKSVSLDYWRDYFRTANSDIFSIIDHAITVAASDCPKEFRLRRDRIAEHLFSFRLTRCSGCNRVELAVPAHEGENDDGGYKRGDGGNCVIDDDDVYTDIDGCDFEAGGSKESKVNGSYRDDIDMDIGEVNVNDQLFSNYSYGEAEALSDEIEEESQVVGEVLRIKDILLNSQDESDSVLFESLRRLQLMSLTVDILKATAIGKAVNGLRKHGSKQISCLARALIDGWKILVDEWYNATKVFKGDEGTPDSVNPSVVDDEEEEGLPSPPLDEAFFATQTTGIELSQFFDGMDDFGNPRNCGEFIKNRENGRKPSVESRNITKQKLQTPNEVNVIAKDNKSQQMRRQEAVPKLNKPSHTDSGPGRPPRQSAEQKTKTDPKIHRKMDKVTNLRKPPSGQQDKLKCSDEVAEMKLEVTKRKLHESYQQAENAKKQRTIQVMELHDLPKQGLVHKNPHMRPGSHNRNWAHGRRL
Length469
PositionUnknown
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.06
Grand average of hydropathy-0.843
Instability index40.66
Isoelectric point5.60
Molecular weight52908.41
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00776
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     138.83|      25|      26|     363|     387|       1
---------------------------------------------------------------------------
  267-  294 (24.43/11.68)	.PPLDEAFF.ATQTTgielSQFFD.GMDDFG
  310-  331 (30.37/16.15)	RKP..SVES.RNITK....QKLQT.P.NEVN
  335-  355 (20.64/ 8.83)	KDNKSQQMR.RQEAV....PKLNK.PS....
  363-  387 (41.71/24.68)	RPPRQSAEQ.KTKTD....PKIHR.KMDKVT
  391-  414 (21.68/ 9.61)	KPP..SGQQdKLKCS....DEVAEmKLE.VT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.38|      11|      19|      75|      85|       2
---------------------------------------------------------------------------
   75-   85 (22.17/12.08)	NDDGGYKRGDG
   91-  101 (21.21/11.28)	DDDDVYTDIDG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00776 with Med26 domain of Kingdom Viridiplantae
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