<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00775

Description Uncharacterized protein
SequenceMDNGSQSSGAQFRSVVPAQQGQPYIPQQFRPVGQGMPSNVGMLPGQSQTLQFSQPMQQLPQWPNQPGHATASQAVPLPYAHPNRLLTSGPPQLQQTAPPVSNHATGLGMSGVPLSSPYAFAPSSFGQPQNNAIASTQFQPMPQMHAHLVPPGGQPWLPAGSNGQSLATAVQPTGQQPSVSSSSDPAVNAPNVGQLASSDWQEHTAADGRRYYYNKKTKQSSWEKPFELMTAIERADASTVWKEFTTSEGKKYYYNKVTKQSKWSIPEELKLAREHAQQAVGQGTQSEVDAASHASSTVAVTSGETSNIAISASSSSSTLFGATSSPIPVTPVSNPAVVVSGSSTLLVAQSSIANTAGVQPAVVTTTLLPTAVSGSTGVTATLVNAKMLTTGFDNLAPQVAANSVDGASMLESEQEMKQRMEVAGKSDADVLEEKAADDEPLVFATKLEAKNAFKALLESANVQSDWTWEQAMREIVNDKRYGALKTLGERKQAFNEYLGQRKKIEAEERRMRQKRAREEFTKMLEESNELTSSMKWSKAVSLFESDERFKAVEKARDRQDLFNNYMEELARKEKEKAEEDHRRNKAEYKKFLESCDFIKVNSRWQKVQDRLEDDERCLRLEKVDRLVVFQDYIRDLEKEEEKQKMIQKEQRRRAERKNRDAFRKLLEDHVADGSLTAKTHWLDYCLKVKDLPQYHAVATNTSGSTPKDLFEDVAEELEKQYHDDKTRIKDAMKSGKITMTSAWTFEDFKAAISDDIGSPPISDINLKLLYDELLERAKEKEEKEAKKRQRLADDLTKLLHSFKEITASSTWEDSKQLIEESQEYRSIGEESVSREIFEEYVAHLQEKAKEKERKREEEKAKKEKEREEKEKRKERERKEKEKEKEREREKGKERIKKDETDSENVDATDSYGHKEDKKREKDKDRKHRRRHQSGADDISSDRDEKEESKKSRRHGSDRKKSRKHSYTPESDSESRHKRHKRDHRDSSRRNGGYEELEDGELGEDGEIQ
Length1008
PositionUnknown
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.06
Grand average of hydropathy-1.060
Instability index58.37
Isoelectric point6.44
Molecular weight114041.31
Publications
PubMed=24837971

Function

Annotated function 
	ARBA:ARBA00003976
GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00775
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      99.22|      23|      24|     291|     313|       2
---------------------------------------------------------------------------
  291-  313 (36.30/25.65)	ASHASSTVAVTSGETSNIAISAS
  321-  340 (30.56/20.30)	GA.TSSPIPVTP..VSNPAVVVS
  353-  375 (32.37/21.99)	ANTAGVQPAVVTTTLLPTAVSGS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     137.87|      24|      24|     950|     973|       3
---------------------------------------------------------------------------
  886-  903 (23.85/ 9.64)	REREKGKERiKK.........DETDSE
  917-  940 (37.56/19.59)	KKREKDKDR.KHR..RRHQSGADDISS
  950-  973 (42.95/23.51)	KSRRHGSDR.KKS..RKHSYTPESDSE
  975- 1000 (33.51/16.66)	RHKRHKRDH.RDSsrRNGGYEELEDGE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     481.37|      64|      65|     513|     576|       4
---------------------------------------------------------------------------
  408-  441 (23.81/ 9.54)	...........................................SMLESEQEMK.QR...MEVAGKSD..........ADVLEEKAA.DDEPL
  445-  508 (77.17/50.44)	TK.......lEAK....NAFKALLES...AN.VQSDWTWEQAMREIVNDKRYG.AL...KTLGERKQ........AFNEYLGQRKK.IEAEE
  513-  576 (97.27/65.84)	QK........RAR....EEFTKMLEE...SNELTSSMKWSKAVSLFESDERFK.AV...EKARDRQD........LFNNYMEELAR.KEKEK
  581-  644 (81.25/53.56)	HR........RNK....AEYKKFLES...CDFIKVNSRWQKVQDRLEDDERCL.RL...EKV.DRLV........VFQDYIRDLEKeEEKQK
  647-  719 (66.53/42.28)	QKeqrrraerKNR....DAFRKLLEDhvaDGSLTAKTHWLDYCLKVKDLPQYH.AVatnTSGSTPKD........LFEDVAEEL......EK
  723-  783 (56.67/34.72)	DD........KTR.......IKDAMK...SGKITMTSAWT........FEDFKaAI...SDDIGSPPisdinlklLYDELLER.AK.EKEEK
  784-  851 (78.67/51.59)	EA........KKRqrlaDDLTKLLHS...FKEITASSTWEDSKQLIEESQEYR.SI...GEESVSRE........IFEEYVAHLQE.KAKEK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     188.72|      38|      38|     196|     233|       5
---------------------------------------------------------------------------
  134-  171 (47.89/24.70)	ASTQFQPmpqmhaHLVPPGGQPWLPAGSNGQS......LATAVQ
  196-  233 (72.77/41.22)	ASSDWQE......HTAADGRRYYYNKKTKQSSWEKPFELMTAIE
  237-  274 (68.05/38.09)	ASTVWKE......FTTSEGKKYYYNKVTKQSKWSIPEELKLARE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.19|      12|      16|      53|      65|       6
---------------------------------------------------------------------------
   53-   65 (22.74/18.92)	SQPMqQLP.QWPNQ
   72-   84 (17.46/ 7.93)	SQAV.PLPyAHPNR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     104.13|      23|      66|      21|      44|       7
---------------------------------------------------------------------------
   21-   44 (42.89/35.55)	GQPY.IPQQFRPVGQGMPSNVGMlP
   89-  110 (37.43/25.27)	GPPQ.LQQTAPPV.SNHATGLGM.S
  111-  130 (23.81/12.62)	GVPLsSPYAFAPSSFGQPQN.....
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00775 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HLQEKAKEKERKREEEKAKKEKEREEKEKRKERERKEKEKEKEREREKGKERIKKDETDSENVDATDSYGHKEDKKREKDKDRKHRRRHQSGADDISSDRDEKEESKKSRRHGSDRKKSRKHSYTPESDSESRHKRHKRDHRDSSRRNGGYEELEDGELGEDGEIQ
2) IPEELKLAREHAQQAVGQGTQSEVDAASHASST
3) MDNGSQSSGAQFRSVVPAQQGQPYIPQQFRPVGQGMPSNVGMLPGQSQTLQFSQPMQQLPQWPNQPGHATASQAVPLPYAHPNRLLTSGPPQLQQTAPPVSNHATGLGM
4) PYAFAPSSFGQPQNNAIASTQFQPMPQMHAHLVPPGGQPWLPAGSNGQSLATAVQPTGQQPSVSSSSDPAVNAPNVGQLASSDWQ
843
265
1
117
1008
297
109
201










Molecular Recognition Features






MoRF SequenceStartStop




1) KRDHR
2) YEELED
3) YIPQQFR
980
993
24
984
998
30