<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00771

Description Uncharacterized protein
SequenceMTNESRMRKNLSNSSEAYKCDEKLPKLNWSQHVNAHDNFSSQKKFLSSNFLFSLESQKRHIEGSMAIRLSCCQIQSFEQLQSPQIEKAWHTLSSLQISCRSYLQPGKTGPTKDARNDLKSSSNNCKYSERTLVHQNFSESRVKNNESVRYMGNSFPQDNARAAEARNSVGQQTEIKASGANNTLSRDFAGSFNNHNIHTNQNRESAEASADFIDDDDLLGNIDVDQIVIEHYQSTCTPQPSISKFPPITPTLDKSNFARSEENLLPPELCQNCNHGVKLGLCPEANNHLQEMKDMLIAVSNELLDNTNLTPSQIEKLRLDRLQLNKQIPQLERYLRDDERKKSHFSASTMTGNFQYETPQSTACRIDPMRFDAHVHLRSEPAGRENWNLPSVSFPSVDRLGFSSGPIEREPYVPRFIEVNYIEGSNDPKWSSKNFAWTKKLEAYNKKVFGNHSFRPNQREVINATMSGFDVFVLMPTGGGKSLTYQLPALICPGVTLVISPLVSLIQDQIMHLLQVNISATYLSASMEWTEQQEILRELCSDNCKYKLLYVTPEKVAKSDVLLRHLESLNARGLLARIVIDEAHCVSQWGHDFRPDYKELGILKKKFEKTPVLALTATATASVKEDVVQALGLVDCIIFRQSFNRPNLWYSVIPKTKKCLDDIDKFIKENHFDECGIIYCLSRMDCEKVAEKLQECGHKAAFYHGNMDAAQRAFVQKQWSKDEVNIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDGQRSSCVLYYSYSDYIRVKHMIIQGQMEQSPWTPAYNRSNMTNSERVLEKNTENLLRMVSYCENDVDCRRLLQLLHFGEKFDSGNCKKTCDNCSTTKTLVEKDVTENAKQLVELVKLTGQQFSSSHILEVYRGSLNQYVKRYRHEKLNLHGAGKHLAKSEASRILRHLVTDDFLVEDVKKSDIYGSVSSVLKVNESKAYSLCSGRQTIILRRDILFAYLIYTIMTLALTAQVLCRFPSAVKPSKQSKFSVTPAKGLLVSGKQSPPRVDTPAQPQSEGDFAPAQPQPEGDLNLSAKLYSALRMLRTILVKEAGEGVMAYHIFGNATLQHLSKRIPRTKEELLEINGIGKVKVSRYGDRLLETIESTIKEYYKTDRNSSSSNDSNDSMKRRRNENANPNGFVEDDDYTKSTGRSKRRAAKFQNKDPDVHNSSKTDYNCLDDDLDFQDLCYDQDINSLEIEAEKNCTGRVLPSWSTPGNKVKSSNLFQ
Length1252
PositionUnknown
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.08
Grand average of hydropathy-0.590
Instability index50.35
Isoelectric point8.31
Molecular weight141989.92
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
3'-5' DNA helicase activity	GO:0043138	IEA:InterPro
ATP binding	GO:0005524	IEA:UniProtKB-KW
hydrolase activity	GO:0016787	IEA:UniProtKB-KW
nucleic acid binding	GO:0003676	IEA:InterPro

GO - Biological Process
DNA recombination	GO:0006310	IEA:InterPro
DNA repair	GO:0006281	IEA:InterPro
DNA replication	GO:0006260	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00771
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      68.20|      21|      24|      53|      74|       1
---------------------------------------------------------------------------
   53-   74 (34.23/23.42)	SLES.QKRHIEGSMAiRLSCCQI
   76-   97 (33.97/18.73)	SFEQlQSPQIEKAWH.TLSSLQI
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.78|      20|      24|     384|     406|       2
---------------------------------------------------------------------------
  384-  406 (29.67/24.43)	RENWnLPsvSFPSVDRLGFSSGP
  409-  428 (38.11/20.32)	REPY.VP..RFIEVNYIEGSNDP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.88|      21|      24|     670|     690|       3
---------------------------------------------------------------------------
  627-  647 (30.82/16.39)	VVQ........ALGLVDCIIFRQSFNRPN
  648-  676 (30.03/15.81)	LWYsvipktkkCLDDIDKFIKENHFDECG
  677-  697 (35.03/19.55)	IIY........CLSRMDCEKVAEKLQECG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      38.22|      11|      16|    1011|    1021|       4
---------------------------------------------------------------------------
 1011- 1021 (20.45/13.16)	KQSKFSV.TPAK
 1028- 1039 (17.78/10.41)	KQSPPRVdTPAQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.19|      16|      17|     822|     837|       5
---------------------------------------------------------------------------
  822-  837 (29.66/16.24)	LLRMVSYCE..NDVDCRR
  838-  855 (23.53/11.53)	LLQLLHFGEkfDSGNCKK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.27|      18|      24|    1186|    1203|       6
---------------------------------------------------------------------------
 1186- 1203 (34.64/22.09)	FQN..KDPDVHN.SSKTDYNC
 1210- 1230 (23.63/12.67)	FQDlcYDQDINSlEIEAEKNC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     100.39|      31|     417|     122|     166|       7
---------------------------------------------------------------------------
  123-  154 (49.95/41.32)	NNCKySERTLVHQNFSESRVKNNESVRYMGNS
  858-  888 (50.44/32.02)	DNCS.TTKTLVEKDVTENAKQLVELVKLTGQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      93.25|      28|     144|     449|     477|       9
---------------------------------------------------------------------------
  449-  477 (47.33/38.40)	FGnHSFRPNQRE..VINATMSGFDVFVLMPT
  589-  618 (45.92/31.71)	WG.HDFRPDYKElgILKKKFEKTPVLALTAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     243.59|      92|     802|     246|     343|      10
---------------------------------------------------------------------------
  248-  343 (140.61/127.00)	ITPTLDKSNFARSEENLLPPELC.QNCNHGVkLGLCPE......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................aNNHLQEMKDMLIAVSNELLDNTNLTPSQIEKLRlDRLqLNKQIPQLERYLRDDERKKS
  518-  554 (31.65/11.57)	ISATYLSASMEWTEQQEILRELCsDNCKYKL.LYVTPE.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................
 1090- 1145 (71.33/46.76)	......................................kvaksdvllrhleslnargllarivideahcvsqwghdfrpdykelgilkkkfektpvlaltatatasvkedvvqalglvdciifrqsfnrpnlwysvipktkkclddidkfikenhfdecgiiyclsrmdcekvaeklqecghkaafyhgnmdaaqrafvqkqwskdevniicatvafgmginkpdvrfvihhslpksiegyhqecgragrdgqrsscvlyysysdyirvkhmiiqgqmeqspwtpaynrsnmtnservlekntenllrmvsycendvdcrrllqllhfgekfdsgnckktcdncsttktlvekdvtenakqlvelvkltgqqfssshilevyrgslnqyvkryrheklnlhgagkhlakseasrilrhlvtddflvedvkksdiygsvssvlkvneskayslcsgrqtiilrrdilfayliytimtlaltaqvlcrfpsavkpskqskfsvtpakgllvsgkqspprvdtpaqpqsegdfapaqpqpegdlnlsaklysalrmlrtilvkeagegvmayhifgNATLQHLSKRIPRTKEELLEINGIGKVKVSRYG.DRL.LETIESTIKEYYKTDRNSSS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00771 with Med34 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) KNNESVRYMGNSFPQDNARAAEARNSVGQQTEIKASGANNTLSRDFAGSFNNHNIHTNQNRESAEASADF
2) YYKTDRNSSSSNDSNDSMKRRRNENANPNGFVEDDDYTK
143
1136
212
1174










Molecular Recognition Features






MoRF SequenceStartStop




NANANA