<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00770

Description Uncharacterized protein
SequenceMPPQGHSQGQSLPIPLSVNQSQTRQQLLPQNIQNNMPSTGVQGSATLTSALPSVSGLAQNSISNVVSQNPNMQNIPGVQQNSAANSMGQGVPSNIFANSQRQMQGRQPVLPQQQQQQQSQQYNIYHQQLQQQFMKQKLQQQGNLPHNLVPSHIQQQQQQQQQQQQQQQQNLLQPTQLQSSQQSSMQTSSVMQPSMMQSAPLSGLQQNQPSVQQSTQSMLQQHQQSVLRQPQQTQQTASIHQQQSSMMQQPLLPPQQQLMGQQPNTGNMQQNQLIGQQNSVGDMQQQQQRLLGQQNALQNLQQQQQHQQQQLMVQQNNLSSMHQQQLGSQNNVSGLQQQQQLLGTQPGNSSMQSNQHSVHMLQQQKVPLQQPAQQNATNLLPTQGQQSQAQLPQQQLMSQMQSQPTQLQQQLGLQQQSNPLQRDLQPRIQSSSQAPGSLLQQQNVIDQQKQLYQPQRALPETSSTSLDSTAQTGHANGGDWQEEVYQKIKAMKEMYLPELNEMYQKISTKLQQHDSLPQQSKPEQLEKLKVFKAMLERIISFLQVSKNNILPGFKDKLGSYEKQIINFINTNRPRKSTPSLQPGQIPQSHIQQPQSQVSQVQSHENQMNPQMQSMNLQGSVPTMQQNNMSLQHSSLSSLSAASTSQQNMMNSLQPSSNLDSGQGNAMSSLQQATVGSVQQNPVSTPQQSNINNLSSQNGVNMLQPNIPLQSNPSMLQHQHLKQQQEQQMTQQRYQQRQVQQQLIQKQQILQQQQQQQFHQQAKQQLPAQMQAHQMPQVHQMNDVNELKIRQGMTVKPGVFQQHLPTIQRTAYPHQQLKSGASFPISSPQLIQAASPQLSQHSSPQVDQQNLLSIKAGTPLQSANSPFVAPSPSTPLNASPIQGDSEKPVSGISSLSNAGTIGQQQTTGAQAPAPSLAIGTPGISASPLLAEFTGSDGAPGNALTIASGKSAAMEQPLERLIKVVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTNCRLQARNFITQDGVSGTKKMRRYTSAMPLNVVSSASSVSDSFKQLSGPETSDLESTATSCVKRPRIEANHALLEEIREINQRLIDTVVDISEEDVDPTAAAAAFEGGEGTIVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPANYPNCSPILLDNLPVEVSKEYEDLSVKAKSRFNISLRSLSQPMSLGDIAKTWDVCARAVISDHAQQSGGGSFSSKYGTWENCLSAA
Length1242
PositionTail
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.03
Grand average of hydropathy-0.740
Instability index75.80
Isoelectric point9.19
Molecular weight136263.78
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00770
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     979.92|     137|     138|     154|     290|       1
---------------------------------------------------------------------------
   19-  154 (115.69/18.84)	..................NQ..SQTRQQL......L........PQNI....QNNMPSTGVQGSATLTS.AlPsV.SG........LAQNSisnvvsqnpnmqniPGVQQnsAAN...SMGQgvpsnifansqrqmQGR..QPVLPQQQ.QQ.QQ..S...QQYNIYHQQL...QQQF.M.KQKlQQQGNLPHN.LV.....PSHIQ.......
  155-  290 (256.48/53.20)	.QQ.......Q..QQQQQQQ..QQQQQNL......L.....Q..PTQLQSSQQSSMQTSSVMQPSMMQS.A.P.L.SG........LQQNQ..............PSVQQ..STQ...SMLQ..............QHQ..QSVLRQPQ.QT.QQTASIHQQQSSMMQQPLLPPQQQL.M.GQQ.PNTGNMQQNQLIGQQNSVGDMQQQ.QQRL
  293-  368 (113.47/18.30)	QQN.....alQ..NLQQQQQ..HQQQQLM......V.....Q..QNNLSSMH....................................................................................................qQQLGS..QNNVSGLQQ.....QQQL.L.GTQ.PGNSSMQSN.....QHSVHMLQQQ.KVPL
  373-  488 (132.59/22.96)	QQNatnllptQ..GQQSQAQ..LPQQQ.L......MsqmqsQ..PTQLQ..QQLG......LQ...QQS.N.P.LqRD........LQ.................PRIQS..SSQapgSLLQ..............Q....QNVIDQQK.Q.......LYQPQRA......LP.........ET.SST.SLDSTAQTGHANG.GDWQEEvYQKI
  511-  628 (110.32/17.53)	QQH.......D..SLPQQSK..PEQLEKLkvfkamL.....EriISFLQVSKNNIL.......PGFKDK.....L.GSyekqiinfINTNR..............P..RK..STP...S.LQ..............PGQipQSHIQQPQsQV.SQVQS.HENQ........MNPQMQS.M.NLQ.GSVPTMQQNNM..................
  631-  742 (127.61/21.75)	................................................QHSSLSSLSAASTSQQNMMNSlQ.P.S.SN........LDSGQ..........gnamSSLQQ..ATV...GSVQ..............QNP..VS...TPQ.QS.N.INNLSSQNGVNMLQPNIPLQSNPsM.LQH.QHLKQ.QQEQQMTQQRY..QQRQV.QQQL
  744-  849 (123.76/20.81)	QKQ.......QilQQQQQQQfhQQAKQQL...............PAQMQAHQ..........MPQVHQM.N.D.V.NE........LKIRQ.........gmtvkPGV............FQ..............QHL..PTI.........QRTAYPHQQLKSGASFPISSP..QL.IqAAS.PQLSQHSSPQ.VDQQN.............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.01|      19|      25|     906|     924|       2
---------------------------------------------------------------------------
  864-  877 (26.32/11.50)	SPFV.APSPS....TP.LNA
  906-  924 (35.28/18.19)	TGAQ.APAPSLAIGTPGISA
  932-  950 (22.41/ 8.59)	TGSDgAPGNALTIAS.GKSA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.34|      16|      16|    1145|    1160|       3
---------------------------------------------------------------------------
 1145- 1160 (29.85/15.47)	SPI..QPLRLLVPANYPN
 1162- 1179 (23.49/10.79)	SPIllDNLPVEVSKEYED
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.53|      15|      16|     965|     980|       4
---------------------------------------------------------------------------
  965-  980 (20.78/16.88)	SMSPKaLSASVSDIGS
  983-  997 (26.76/16.95)	SMIDR.IAGSAPGNGS
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00770 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AQNSISNVVSQNPNMQNIPGVQQNSAANSMGQGVPSNIFANSQRQMQGRQPVLPQQQQQQQ
2) GVFQQHLPTIQRTAYPHQQLKSGASFPISSPQLIQAASPQLSQHSSPQVDQQNLLSIKAG
3) IINFINTNRPRKSTPSLQPGQIPQSHIQQPQSQVSQVQSHENQMNPQMQSMNLQGSVPTMQQNNMSLQHSSLSSLSAASTSQQNMMNSLQPSSNLDSGQGNAMSSLQQATVGSVQQNPVSTPQQSNINNLSSQNGVNMLQPNIPLQSNPSMLQHQHLKQQQEQQMTQQRYQQRQ
4) KQLYQPQRALPETSSTSLDSTAQTGHANGGDWQEE
5) MKQKLQQQGNLPHNLVPSHIQQQQQQQQQQQQQQQQNLLQPTQLQSSQQSSMQTSSVMQPSMMQSAPLSGLQQNQPSVQQSTQSMLQQHQQSVLRQPQQTQQTASIHQQQSSMMQQPLLPPQQQLMGQQPNTGNMQQNQLIGQQNSVGDMQQQQQRLLGQQNALQNLQQQQQHQQQQLMVQQNNLSSMHQQQLGSQNNVSGLQQQQQLLGTQPGNSSMQSNQHSVHMLQQQKVPLQQPAQQNATNLLPTQGQQSQAQLPQQQLMSQMQSQPTQLQQQLGLQQQSNPLQRDLQPRIQSSSQAPGSLLQQQNVID
6) MPPQGHSQGQSLPIPLSVNQSQTRQQLLPQNIQNNMPSTGVQGSATLTSALPSV
7) PLQSANSPFVAPSPSTPLNASPIQGDSEKPVSGISSLSNAGTIGQQQTTGAQAPAPSLA
8) QQQQFHQQAKQQLPAQMQAHQMPQVHQMNDVNELKIRQGMTVK
58
797
564
449
134
1
858
753
118
856
737
483
446
54
916
795










Molecular Recognition Features






MoRF SequenceStartStop




NANANA