<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00753

Description Mediator of RNA polymerase II transcription subunit 4
SequenceMLSHQIVQSPARLGLTNPNSPLQNATPPKFPSSSSQQLPTPQQQQLQQHPSNPATTSTSSALLSLLPPLRRAQSLLLQMASLASKFFEVSPNRAFWLSAFRGSLPTFLSSQTQSMAPPPLESTPTSTKEVLSLFTSLQTQLFEAVAELQEILDLQDAKQRLAREIKSKDSALLNFANKLKEAERVLDMLVDDYSDYRRPKRAKSKLSADVPEDDDVSNTTVASQLELSDILSYAHRISYTTFAPPEYGAGQVPLRGALPPAPQEEQMRASQLYAFADLDVGLPKKIETKEKTIEAIIELPPPAQPAETNPFANFPAIQGLLPTNITVPSGWKPGMPVELPTNLPPPPPGWKPGDPLPPLESLPLPRMVEQQLQPVAPQGLHKPPETIQVRHVQIDILDQDDDSSDYSSEEGSSDDED
Length417
PositionMiddle
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.06
Grand average of hydropathy-0.483
Instability index72.49
Isoelectric point4.83
Molecular weight45717.05
Publications
PubMed=24837971

Function

Annotated function Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. 
ECO:0000256	RuleBase:RU364141
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro
GO - Biological Function
transcription coregulator activity	GO:0003712	IEA:InterPro
GO - Biological Process
regulation of transcription by RNA polymerase II	GO:0006357	IEA:InterPro

Interaction

Binary Interactions











Repeat regions





Repeats

>MDP00753
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     234.91|      42|      43|     298|     339|       1
---------------------------------------------------------------------------
   10-   49 (46.57/15.59)	...PARL.......GLTNPNSPLQNATPPKFPssSSQ....QL.PTP..QQQQLqqH
   50-  101 (48.96/16.76)	PSNPATTstssallSLLPPLRRAQSL.LLQMA..SLAskffEVSPNRAFWLSAF..R
  298-  332 (55.91/20.17)	..............ELPPPAQPAETNPFANFP..AIQ....GLLPTNITVPSGW..K
  333-  351 (32.49/ 8.68)	PGMPVEL.....ptNLPPP...............................PPGW..K
  352-  382 (50.97/17.75)	PGDPL...............PPLESLPLPRM...VEQ....QLQP...VAPQGL.hK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     111.71|      38|      44|     157|     200|       2
---------------------------------------------------------------------------
  157-  200 (55.40/51.12)	AKQRLAREIKSKD.......SALLNFANKLKEAERVldmlvdDYSDYRRPK
  202-  246 (56.32/38.01)	AKSKLSADVPEDDdvsnttvASQLELSDILSYAHRI......SYTTFAPPE
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00753 with Med4 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) VPSGWKPGMPVELPTNLPPPPPGWKPGDPLPPLESLPLPRMVEQQLQPVAPQGLHKPPETIQVRHVQIDILDQDDDSSDYSSEEGSSDDED
2) VQSPARLGLTNPNSPLQNATPPKFPSSSSQQLPTPQQQQLQQHPSNPATTSTSSALL
327
7
417
63










Molecular Recognition Features






MoRF SequenceStartStop




1) LHKPPETIQVRHVQIDILDQDDDSSDYSSEEGSSDDED
380
417