<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00752

Description Uncharacterized protein
SequenceMTEKQLIVAVEGSAAMGPFWQSILSDYLEKIIRSFVGSDLTGQKPATSTVELSLVTFYAHGSYSACLVQRSGWTRDIDIFLQWLSCIPFAGGGFNDAAIAEGLSEALMMFPFAPNASQAQQNTDAQRHCVLVAASNPHSLPTPVYRPQIQNLEQSENIDLQTESRLSDAETVAKSFPQCSVSLSVICPKQLLKLRAIYNAGKRNTRVADPTVDNVKNPHFLVLISENFMEARTALTRPGVSNLSANQSPVKMDVSSVPSVAGPPPPSISSVNGSIMNRPPISVGNVPTATVKIEPTTVTSMAPGPVFSHIPSARPATQAVPSLQTSSPPTTSQEMMTNGENVPELKPTVSGMPQSVRPVPPGAANVSILNNLSQARQVMNSAALTGGSSIALPSMNQTPVAMHMSNMISSGMATSVPAAQTVFSSGQPGITSMTGSGTLTGTSQIAPNSGLGSFASSTSNISGNSNLGISQPMANLQGGVSMGQSVSGMSQGNLSGGQMVQSVIGMNQNVMNGLGPSGVSSGTSTMIPTPGMPQQAQTGMQSLGVNNNSAANMPLSQQTTSALQSAQSKYVKVWEGNLSGQRQGQPVFITRLEGYRNASASESEVFRSIE
Length610
PositionUnknown
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.04
Grand average of hydropathy-0.128
Instability index56.26
Isoelectric point7.02
Molecular weight63708.29
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00752
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     346.16|      54|      54|     384|     437|       1
---------------------------------------------------------------------------
  239-  282 (45.35/13.07)	..GVSN..L...........SANQSPVKMDVSS.VP.SVAGP.PP.PSISSVNGSimNRPPIS........
  284-  339 (50.21/15.24)	..GNVP..TAtvkiepttVTSMAPGPVFSHIP...S.ARPATqAV.PSLQT..SS....PPTTSqeMMTNG
  384-  437 (97.89/36.55)	LTGGSS..IA........LPSMNQTPVAMHMSNMIS.SGMAT.SV.PAAQTVFSS..GQPGITS..MTGSG
  439-  475 (47.46/14.02)	LTGTSQ..IA.........PNSGLGSFASSTSNISGnSNLGI.SQ.PMA.....................N
  476-  518 (60.73/19.95)	LQGG...............VSMGQSVSGMSQGNLSG.GQMVQ.SViGMNQNVMN...G........LGPSG
  519-  564 (44.52/12.70)	VSSGTStmIP........TPGMPQQAQTGMQSLGVN.NNSAA.NM.PLSQQTTSA..LQ............
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     138.76|      37|      39|     132|     168|       2
---------------------------------------------------------------------------
  112-  147 (51.56/34.25)	FAPNASQAqQNTDAQRHC.....vlVAAS.......NPH.SL..........PTPVYRP
  148-  188 (50.28/33.21)	QIQNLEQS.ENIDLQTESRLSDaetVAKS.......FPQcSV..........SLSVICP
  190-  238 (36.92/22.32)	QLLKLRAI.YNAG.KRNTRVAD.......ptvdnvkNPH.FLvlisenfmeaRTALTRP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.95|      15|      17|     349|     364|       3
---------------------------------------------------------------------------
  349-  364 (24.61/16.01)	VS...GMPQSvRPVPPGAA
  366-  383 (19.34/ 7.61)	VSilnNLSQA.RQVMNSAA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.40|      14|      16|     575|     588|       4
---------------------------------------------------------------------------
  575-  588 (25.19/15.56)	EGNLSGQRQGQPVF
  593-  606 (23.21/13.75)	EGYRNASASESEVF
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00752 with Med25 domain of Kingdom Viridiplantae
Unable to open file!