<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00744

Description Uncharacterized protein
SequenceMRPPRGGRGGGGGGFRGGRGDGGGRGRGGGRGGRGGFDKGSGMKSRGGGRGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEGVFIAKGGKEDALVTRNLVPGEAVYNEKRISVQNEDGSKVEYRIWNPFRSKLAAAILGGVDNIWIKPGAKVLYLGAASGTTVSHVSDLVGPTGVVYAVEFSHRSGRDLVNMAKKRTNVIPIIEDARHPAKYRMLVGMVDVIFSDVAQPDQARILALNASYFLKAGGHFVISIKANCIDSTVPAEAVFESEVKKMTQEQFKPSEQVTLEPFERDHACVIGGYRMPKKQKVAA
Length312
PositionUnknown
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.06
Grand average of hydropathy-0.419
Instability index34.86
Isoelectric point10.19
Molecular weight32909.16
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
methyltransferase activity	GO:0008168	IEA:UniProtKB-KW
RNA binding	GO:0003723	IEA:UniProtKB-KW

GO - Biological Process
methylation	GO:0032259	IEA:UniProtKB-KW
rRNA processing	GO:0006364	IEA:UniProtKB-KW









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00744
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      66.37|      15|      16|      22|      36|       1
---------------------------------------------------------------------------
   22-   36 (37.39/10.72)	GGG.RGRGGGRGGRGG
   40-   55 (28.98/ 6.76)	GSGmKSRGGGRGGRGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      52.30|      12|      49|       7|      18|       2
---------------------------------------------------------------------------
    7-   18 (28.41/ 9.22)	GRGGG.GGGFRGG
   58-   70 (23.89/ 6.58)	GRGGGrGGGMKGG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     181.57|      56|     159|      84|     140|       3
---------------------------------------------------------------------------
   84-  140 (90.75/65.04)	FIAKGGKEDALVTRN....LVPGEAVYNEKRISVQNEDGSKVEYRIWNPFRSKlAAAILGG
  242-  301 (90.82/60.70)	FLKAGGHFVISIKANcidsTVPAEAVFESEVKKMTQEQFKPSEQVTLEPFERD.HACVIGG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00744 with Med36 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) MRPPRGGRGGGGGGFRGGRGDGGGRGRGGGRGGRGGFDKGSGMKSRGGGRGGRGGGRGRGGGRGGGMKGGSKVVVEPHRHEG
1
82










Molecular Recognition Features






MoRF SequenceStartStop




1) MRPPRGGRGGGGGGFRGGRGDGGGRGRGGGRGGRGGFDKGSGMKSRGGGRGGRGGGRGRGGGR
1
63