<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00741

Description Uncharacterized protein
SequenceMEGMIQDQSQLQNQQQQQQPPQMAVAERLNQAVQQQLNLESVKTRAISLFKAISRILEEFDAHARSNANPKWQDILGQYSMVNLELFNIVDEIKKVSKAFVVHPKNVNAENATILPVMLSTKLLPEMEIDDNSKREQLLLGLQNLPISSQIEKLKSRIDMIGAACESAEKVLADTRKAYQFGTRQGPTSLPTLDKTQAAKIQEQENLLRAAVNFGEGLRVTVDQRQITSALPMHLADVLTVGDGVHNVSDSSGMYMKNTPPLSSNSINNQGSLLQASGTALMGRSAASPSAATSATSFDNTTTSPLPYANSPRSGNMMNMPSPQQQTQQQQQQQQQQQRQKMMQLPQHQQQLFAQQQFRQSTMQGLGQTQLPQLHDLQGQGQQKFQPQLHGQHQMQFSQALGHQQFQGRQLPSGHVQHGMGQNPLNQGNQLNRHLTQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRTQFGLTGGNPQRSHTSQILNDQMFNMGVSNPAGMMPIQPQQQQQQQLGSQGAFGNMQPNAQNLQSSMVALQNASQNHPNFVQQRQQNPQ
Length563
PositionHead
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.04
Grand average of hydropathy-0.704
Instability index57.96
Isoelectric point9.25
Molecular weight62208.15
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00741
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      59.94|      21|      24|     381|     404|       1
---------------------------------------------------------------------------
  367-  392 (31.22/11.08)	GQTQLPQ.LHDLqgqGQQkfQPQLHGQ
  393-  417 (28.72/ 9.12)	HQMQFSQaLGHQqfqGRQ..LPSGHVQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     127.09|      22|      23|     317|     338|       2
---------------------------------------------------------------------------
    1-   22 (44.03/12.50)	MEGMIQDQSQL.QNQQQQQQPPQ
  317-  338 (45.67/13.22)	MMNMPSPQQQT.QQQQQQQQQQQ
  342-  364 (37.39/ 9.56)	MMQLPQHQQQLfAQQQFRQSTMQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      84.67|      23|      38|     436|     458|       3
---------------------------------------------------------------------------
  436-  455 (30.65/11.74)	.....TQFSGTANNALFNAAQGAPN
  487-  505 (25.77/ 8.55)	SHT..SQI...LNDQMFNMGVSNP.
  506-  528 (28.25/10.17)	AGMmpIQPQQQQQQQL..GSQGAFG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00741 with Med8 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) HNVSDSSGMYMKNTPPLSSNSINNQGSLLQASGTALMGRSAASPSAATSATSFDNTTTSPLPYANSPRSGNMMNMPSPQQQTQQQQQQQQQQQRQKMMQLPQHQQQLFAQQQFRQSTMQGLGQTQLPQLHDLQGQGQQKFQPQLHGQHQMQFSQALGHQQFQGRQLPSGHVQHGMGQNPLNQGNQLNRHLTQFSGTANNALFNAAQGAPNTQMIPNMSATMSSQPLVPRTQFGLTGGNPQRSHTSQILNDQMFNMGVSNPAGMMPIQPQQQQQQQLGSQGAFGNMQPNAQNLQSSMVALQNASQNHPNFVQQRQQNPQ
246
563










Molecular Recognition Features






MoRF SequenceStartStop




NANANA