<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00740

Description Uncharacterized protein
SequenceMAVSLQQPSQQSLWDWVLELTKSAQDKNSDPLLWAIQLSSRLNSAGVTLPSTELAHLLVSHTCFENHVPIMWKFLEKSLALKIAPPTLVLALLSTRVIPNRKLHPAAYRLYLELVKRHAFSFSSQINGPNYAKIMKLTDDALHLSHIFGLQVCKPGLILVEFVFSMVWQLLDASLDDEGLLDLTSEKKSRWLTSLQDMDIDGHESFGEKRNEHNEGLKSANTTMAIELIGEFLQNKVTSRILYLARKNMSSHWRGFIQRVRLLAAHSAALRNSKHITAEILLQLTSDTRQLLSGDTKRISQQDFHAVMSSRSLISSAGQCHGASWSALWLPIDLFLEDAMDGSQVAAISAVENLTGLVKALQAVNGTTWHDTFLGLWMASLRLVQREREPSEGPVPRLDTCLCMLLCTTTLAVANIIEEEEGELIMETESNPTDQMKEKQGLGKCREGLITALQLLGDYDSLLTPPQSVSLVANQAAAKAMLFISGVTSGNSYYESMSMNDMPMSCSAGNMRHLIVEACIARFLLDTSAYVWPGYVNAHSNQIPRGVLGQMPGWSALMKGSPLTPSMINTLVATPASSLPEIEKVYEIALNGSNDEKLSAATILCGASLSRGWNIQEHTILFIIKLLSPPFPADYSGNDSHLIDYAPLLNILLVGLSSVDCVQILSLHGLVPLLAGALIPICEVFGSSVPKVSWTLPSGEEITCHAVFSNAFSLLVRLWRFHHPPLENVTGDKTPVASKLGPEYLLVVRNSQLASFGSSPRDFIKSRRFSKILNISLEPIFMDSFPKLQLWYRQHLECIASTFSGLVNGTPVHQLVDALLNMMFKRINRGGVQSLTSTTSGSSSSGSGAEEAYVRLQVPAWDILEATPFALDAALTACAHGKLSPRELATGLKDLADFLPASLATIVSYLSAEVTRGIWKPAYMNGTDWPSPAANLSTVEQQIKKILSATGVDVPSLPVGGNSPATLPLPLAALVSLTITYRLDKVSERQLVLIGPALNALASSCPWPCMPIIAALWAQKVKRWSDFLVFSASSTVFHHKGDAVVQLLKSCFTATLGFSAPHISSNGGVGALLGHGFGSHFVGGISPVAPGFLYVRVHRSLRDFVFLTEKIVSILMHSVKEIANSGLPRETVEKLRKTKYGMRYGQVSLTAAMMRVKLAASLGASLVWISGGSSLVQSLVKETLPSWFISGHSLEQEDAESGGLVAMLRGYALAYLVVLSGTFAWGIDSESPASKRRPMVLSCHLKFIASALDGKISLGSDWATTRAFATGVLSLMVACTPKWLTEVNVDLLKRLSKGLRQWNEEQLALDLLGLGGVGTMGAAAELIIETGS
Length1332
PositionTail
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.07
Grand average of hydropathy0.153
Instability index46.98
Isoelectric point6.84
Molecular weight144802.80
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00740
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     126.07|      37|      94|     685|     723|       1
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  685-  723 (61.96/48.13)	FGSSvPK...VSWTLPSGEEITCHAVFSNAFSLLvRLWRFHH
  756-  795 (64.11/40.81)	FGSS.PRdfiKSRRFSKILNISLEPIFMDSFPKL.QLWYRQH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     472.03|     180|     234|     814|    1047|       2
---------------------------------------------------------------------------
  291-  357 (66.92/22.61)	LLSGDTKRISQQDFHAVMSSRSLISSAGQCHGASWSALWLPIDLFLED...AMDGSQVA....AISAVENLTGL..........................................................................................................................................................
  819- 1035 (261.50/294.02)	LLNMMFKRINRGGVQSLTSTTSGSSSSGSGAEEAYVRLQVPAWDILEAtpfALDAALTAcahgKLSPRELATGLkdladflpaslatiVSyLSAEVTRgIwKPAYMNGTD..WPSPAANLstVEQQIKKILsatgvdvPSLPVGGNSPATLPLPLAALVSLTITYRLDKVserqLVLIGPALNALASSCP....WP....C.MPIIAALWAQKVKRWSDFLVFSASST
 1147- 1270 (143.61/81.48)	........................................................................................VS.LTAAMMR.V.KLAASLGASlvWISGGSSL..VQSLVKETL.......PSWFISGHSLEQEDAESGGLVAMLRGYALAYL....VVLSGTFAWGIDSESPaskrRPmvlsChLKFIASALDGKISLGSDWATTRAFAT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     276.79|      87|      98|     492|     585|       3
---------------------------------------------------------------------------
  492-  585 (144.20/85.04)	SYYESMSmnDMPMSCSAGNMRHLIVEACIARFLLDTSAYVWPG.YVNAHSNQIPRGvlgqmPGWSALMKG.SPLTPSMI...NTLVATPASSLPEIEKV
  593-  684 (132.59/65.45)	SNDEKLS..AATILCGASLSRGWNIQEHTILFIIKLLSPPFPAdYSGNDSHLIDYA.....PLLNILLVGlSSVDCVQIlslHGLVPLLAGALIPICEV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.96|      16|     289|     149|     171|       6
---------------------------------------------------------------------------
  149-  171 (25.61/31.10)	GLQVCKPGLIlvefvfsMVWQLL
  441-  456 (29.35/17.61)	GLGKCREGLI.......TALQLL
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00740 with Med33 domain of Kingdom Viridiplantae
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