<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00737

Description Uncharacterized protein
SequenceMNNQQQQQVGSGGNKDHEEESVGQSLEIVAKAAGSEKPEPVSSEEESVEKPDDPMEEDSMSPATVFCIRLKQPRSNLQHKMSVPELCRNFSAVAWCGKLNAIACASETCARIPCSNANPPFWIPIHIVIPERPTECAVFNVIADSPRDSVQFIEWSPTSCPRALLIANFHGRITIWTQPSQGAANLVRDASCWQREHEWRQDIAVVTKWLSGVSPYRWLSSKSSSSTNSKSTFEEKFLSQQSQTSARWPNFLCVCSVFSSGSVQLHWSQWPPSQNNATPKWFSTSKGLLGAGPSGIMAADAIVTDSGAMHVAGVPIVNPSTVVVWEVTPGPGPGFQAIAKTSTSNGVPPSLNPPTWSGFAPLAAYLFSWQEYLISEAKHGKKQTDQDFSDAVSLHCSPVSNFSAYVSPEAAAQSAATTTWGSGVTAVAFDPTRGGSVIAVVIVEGQYMSPYDPDEGPSITGWRVQRWESSLQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIHPTNDFKNHQAVAAGPTSDVRKTSDSGVEKAKSLTFDPFDLPSDVRSLARIVYSAHGGEIAIAFLRGGVHIFSGPNFALVDSYQINVGSAIAAPAFSSTSCCSASVWHDASKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVGVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSTQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPEPWQASGETLSSIDPEAMAVEPNLVPSIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRSVVTSPTQSSASPAASQGGQNGTTSSTGSTQMQAWVQGAIAKISSTSDGVSNSTPNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCYFFRRTQQLPRFIGGAQRNPDSNMQKPQPGAPGKVEEGNSVSSKLAPTMVRSDEGQAARGAQLVPGVKGAEDGPAGRSRLGSGNAGQGYTFEEVRVLFLILMDLCRRTSALAHPLPVSQVGSGNIQVRLHYIDGNYTVLPEVVEASLGPHMQNMPRPRGADAAGLLLRELELHPPSEEWHRRNMFGGPWSDLEDTSSADDTPRQSSYTDSLDFSSLENCDVYCGVNGLWPKKRRMSERDAAFGLNTSVGLGAYLGIMGSRRDVVTAVWKTGLEGVWYKCIRCLRQTSAFASPGATSPPNQNEREAWWISRWAYGCPMCGGTWVRVV
Length1249
PositionTail
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.08
Grand average of hydropathy-0.227
Instability index46.54
Isoelectric point6.14
Molecular weight134774.04
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00737
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     507.33|     161|     175|      24|     198|       1
---------------------------------------------------------------------------
   15-  194 (250.58/173.01)	KDHEeesvgQSLEIVAKAAGSEKP.EPVSSEEESVEKPDDPMEEDSMSPATVFCIRlkQPrsNLqhkMSVpelCRNFSA....VAWC....GKLNAIACASETCARIpcSNANPPFWIPIHIVIPERPTeCAVFNVIADSPrDSVQFIEWSPTSCPRALLIANF...HGRITIWTQPS.QGAANLVRDASCWQ
  195-  370 (256.75/141.01)	REHE...wrQDIAVVTKWLSGVSPyRWLSSKSSSSTNSKSTFEEKFLSQQSQTSAR..WP..NF...LCV...CSVFSSgsvqLHWSqwppSQNNATPKWFSTSKGL..LGAGPSGIMAADAIVTDSGA.MHVAGVPIVNP.STVVVWEVTPGPGPGFQAIAKTstsNGVPPSLNPPTwSGFAPLAAYLFSWQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.67|      44|     177|     391|     437|       2
---------------------------------------------------------------------------
  391-  437 (72.46/44.77)	AVSLHCSPVSNFSayvSPEAAAQSAATTTWGSGVTAVAFDPTR..GGSV
  566-  611 (70.22/36.60)	AIAFLRGGVHIFS...GPNFALVDSYQINVGSAIAAPAFSSTSccSASV
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.77|      30|     177|     510|     565|       4
---------------------------------------------------------------------------
  515-  548 (44.00/62.60)	QAVAAGPTSDVRKTSDsGVEKAkslTFDPFDLPS
  857-  886 (54.78/18.58)	QAWVQGAIAKISSTSD.GVSNS...TPNPISGPS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     246.43|      87|     352|     717|     828|       5
---------------------------------------------------------------------------
  717-  810 (128.73/97.33)	GTNAQEV.RAMVLDmQARLLLDMLGKGIESALINPSALVPEPWQASGETlSSID..PeaMAVEPNLVPSIQAyVDAVLDlaSHFITRLRRYASFC....RT
  887-  929 (46.06/11.41)	...................................................SFM..P..ISINTGTFPGTPA.VRLIGD..CHFLHRLCQLLLFCyffrRT
 1071- 1125 (71.64/26.43)	GPHMQNMpRPRGAD.AAGLLLRELELHPPSEEWHRRNMFGGPWSDLEDT.SSADdtP............................................
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     108.62|      33|     575|     623|     668|       6
---------------------------------------------------------------------------
  623-  668 (49.13/43.83)	KIIRVLPP....AVPSsqvkANSSTWERaiaERF.WWsllvgVDWWdAVGC
 1201- 1238 (59.49/26.52)	KCIRCLRQtsafASPG....ATSPPNQN...EREaWW.....ISRW.AYGC
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      89.73|      25|      44|     938|     962|       7
---------------------------------------------------------------------------
  938-  962 (46.34/30.02)	GAQRNPDSNMQKPQPGAPGKVEEGN
  983- 1007 (43.39/27.54)	GAQLVPGVKGAEDGPAGRSRLGSGN
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00737 with Med16 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) FIGGAQRNPDSNMQKPQPGAPGKVEEGNSVSSKLAPTMVRS
2) GTGSNRSVVTSPTQSSASPAASQGGQNGTTSSTGSTQ
3) MNNQQQQQVGSGGNKDHEEESVGQSLEIVAKAAGSEKPEPVSSEEESVEKPDDPMEEDSMSP
935
819
1
975
855
62










Molecular Recognition Features






MoRF SequenceStartStop




1) NKDHEEESVGQSLEIVAKAAG
14
34