<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00730

Description Uncharacterized protein
SequenceMSSTSTVSQSISLPLHSPSSSTLPSSPNLGPSTSQMPVVPSLLVPPRLAGTTRAPESSALVSCAPMTLPSVPVDPASSAVQRPMMLTNTPASNPVVQQQAYPTYPSLPAMAAPPQGLWFQPPQMGGLPRPPFLPYPAVFPGPFPLPAHSIPRASVSSPDSQPPGVTPVGTAGANPPSSAASGLQLIGTPGMQKELPPPGIDNKDHIHVFDNKDNVAINEPLDSWTAHKTDTGIVYYYNAITRVSTYEKPLGFKGEPEKVPMQPTPVSMENLAGTDWALITTNDGKKYYYNNKTKVCSWQIPSEVTELTKKQEAEVSKELEVSLLRSNVSTEKGSGPVSLSAPAINTGGRDATALRTSSAPGPSSALDLIKKKLQESGTPVNSSPALVSLGMGTPESNGSRAAEATAKGLLSETSNDKLKDTNGGGNASDSSSDSEDEDSGPTKEECIIQFKEMLKERGIAPFSKWEKELPKIVFDPRFKAIPSHSARRSLFEHYVKTRAEEQRKEKRASQKAAIEGFKQLLVEASEDIDQYTDYQTFRKKWENDPRFEALDRKDREHLLNERVIPLKKAAQEKVQAERAAAAASFKSMLQDKGDITINSRWSKVKESLRNDPRYKSVKHEDREFLFNEYLSELKAVEEEAEREAKVKKEEQEKLKERERELRKRKEREEQEMERVRLKVRRKEAVSSFQALLVETIKDPQASWTESKPKLEKDSQGRATNPDLDPSDTEKLFREHVKMLHERCTQDFKALLAEVINAETAAQKSENGKTVLDSWSTVKRLLKPDPRYNKMPRKEREILWRRYTQDILRKQQTTLDQKEEKHTDSKSRNSADSGRYLSGSRRTHDGR
Length846
PositionUnknown
OrganismJatropha curcas (Barbados nut)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> fabids> Malpighiales> Euphorbiaceae> Crotonoideae> Jatropheae> Jatropha.
Aromaticity0.06
Grand average of hydropathy-0.812
Instability index52.14
Isoelectric point8.81
Molecular weight93996.72
Publications
PubMed=24837971

Function

Annotated function 
GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00730
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      74.30|      15|      15|     158|     172|       1
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  140-  154 (24.21/ 9.70)	PGPFPLPAHSIPRAS
  158-  172 (27.67/12.11)	PDSQPPGVTPVGTAG
  176-  190 (22.42/ 8.44)	PSSAASGLQLIGTPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      82.98|      15|      15|     639|     653|       2
---------------------------------------------------------------------------
  559-  573 (20.65/11.32)	LNER...VIPLKKAAQEK
  575-  592 (15.83/ 6.84)	QAERaaaAASFKSMLQDK
  639-  653 (23.95/14.40)	EAER...EAKVKKEEQEK
  656-  670 (22.55/13.10)	ERER...ELRKRKEREEQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     176.19|      32|      66|     527|     558|       3
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  527-  558 (58.69/38.33)	D.............IDQYTD........YQTFRKKWENDPRFEA....LDRKDREHL
  594-  625 (52.84/33.67)	D.............ITINSR........WSKVKESLRNDPRYKS....VKHEDREFL
  703-  731 (27.22/13.24)	............................WTESKPKLEKDSQGRAtnpdLDPSDTEKL
  746-  798 (37.44/21.39)	DfkallaevinaetAAQKSEngktvldsWSTVKRLLKPDPRYNK....MPRKEREIL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      53.99|      14|      15|     101|     114|       4
---------------------------------------------------------------------------
  101-  114 (28.49/12.25)	YPTYPSLPAMAAPP
  118-  131 (25.50/10.25)	WFQPPQMGGLPRPP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     218.20|      59|      60|     253|     311|       5
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  213-  257 (48.21/29.04)	...........DNVAIN.EpldsWTAHKTDTGIVYYYNAITRVSTYEKP.........L.gfKGEPE
  258-  318 (97.47/67.10)	KVPMQPTPVSMENLAGT.D....WALITTNDGKKYYYNNKTKVCSWQIPSEVTELTKKQ.eaEVSKE
  320-  379 (72.52/47.83)	EVSLLRSNVSTEKGSGPvS....LSAPAINTGGR..DATALRTSSAPGPSSALDLIKKKlqeSGTP.
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      40.98|      13|      15|     411|     424|       6
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  411-  424 (18.64/16.27)	SETSNDKlKDTNGG
  428-  440 (22.34/14.08)	SDSSSDS.EDEDSG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      76.99|      22|      56|      12|      39|       7
---------------------------------------------------------------------------
   18-   39 (40.08/28.50)	PSSSTLPSSPNLGPSTSQMPVV
   75-   96 (36.91/13.60)	PASSAVQRPMMLTNTPASNPVV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00730 with Med35 domain of Kingdom Viridiplantae
Unable to open file!