<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00714

Description Uncharacterized protein
SequenceMGDGNTSTGRGGTGTSNHGEKPEWLQQYNLIGKIGEGTYGLVFLARIKAAANRGKAIAIKKFKQSKDGDGVSPTAIREIMLLREITHENVVKLVNVHINHADMSLYLAFDYAEYDLYEIIRHHRDKVNHTMNPYTVKSILWQLLNGLNYLHSNWIIHRDLKPSNILVMGEGEEQGVVKIADFGLARIYQAPLKFLSENGVVVTIWYRAPELLLGAKHYTSAVDMWAVGCIFAELLTLKPLFQGAEAKSTQNPFQLDQLDKIFKILGHPTPEKWPTLANLPHWQSDSLHIQGRKYETNGLHSVVPLSPKSPAYDLLSKMLEYDPRKRITAAQALEHEYFRIEPLPGRNALVPSQPGDKVVNYPTRPVDSNTDFEGTTTLQPPQPASGPVPGNMAGAHAVSNRNVPRPMPGVGMQRMQAQGMMTYNFPGQAGAAGGMNPANMPMQRGMPGQAHQQQQLRRKDPGMGLPGYPPQQKSRRL
Length477
PositionKinase
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.458
Instability index38.39
Isoelectric point9.35
Molecular weight52997.10
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
nucleus	GO:0005634	IBA:GO_Central

GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
cyclin-dependent protein serine/threonine kinase activity	GO:0004693	IBA:GO_Central
RNA polymerase II CTD heptapeptide repeat kinase activity	GO:0008353	IBA:GO_Central

GO - Biological Process
protein phosphorylation	GO:0006468	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00714
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     174.30|      54|     100|     198|     252|       1
---------------------------------------------------------------------------
  198-  252 (89.89/54.79)	NGV..VVTIWYRAP..ELLLGAKHYTSAVDMWAVGCIFAELLTLKPLfQGAEAKSTQNP
  297-  354 (84.41/47.08)	NGLhsVVPLSPKSPayDLLSKMLEYDPRKRITAAQALEHEYFRIEPL.PGRNALVPSQP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      72.57|      13|      16|     445|     457|       2
---------------------------------------------------------------------------
  406-  418 (23.42/13.19)	PMPGVGMQRMQAQ
  445-  457 (25.75/15.34)	GMPGQAHQQQQLR
  464-  476 (23.39/13.16)	GLPGYPPQQKSRR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.89|      16|      36|     389|     404|       3
---------------------------------------------------------------------------
  389-  404 (29.78/16.95)	PGNMAGAHAVSNRNVP
  426-  441 (31.12/18.04)	PGQAGAAGGMNPANMP
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00714 with CDK8 domain of Kingdom Viridiplantae
Unable to open file!