<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00708

Description Uncharacterized protein
SequenceMLLSHLLPLFRRTHWVVFIQRLRLLGANSSALKSSTILTPEDLLQLTSDTHLGLSQECKTSPQPKFDAVLAFGSLASSAGLCHGASRSALWLPLDLVLEDALDGYQVNATSAIEIITSLIKTLQAINGTTWHETFLGLWIAALRLVQRERDPIEGPMPRLDPRLCMLFSVTTLLIADLIDEEESAPNDETECGFTYPWKEKKVPGKRRNDLVSSLQVLGDYQGLLTPPQSVVSAANQAAAKAMLFVSGIDVGSAYFECINMKDMPVNCSGNLRHLIVEACIARNLLDTSAYFWPGYVNGHINQIPNTVPAQVPGWSSFTKGAPLTPLMVNALVSSPASSLAELEKVFEIAIKGADDEKIFAATVLCGASLIRGWNIQEHTVQFITRLLSPPAPAEYDGGESHLIGYAPMLNVLMVGISPVDCVQIFSLHGLIPQLACSLMPICEVFGSCVPNVSWTLPTGEEISAHAVFSNAFALLLKLWRFNHPPIEHGVGDVPTVGSQLTPEYLLSVRNSHLLSSQSIHQDRNKRRLSAAASSSSPEPIFVDSFPKLKVWYRQHQRCIAATLSGLVHGTQVHQTVDELLSMMFRKINRASQGLNSVASGSSSSSGPGNEDSSLRPKLPAWDILEAVPFVVDAALTGCAHGRLSPRELATGLKDLADFLPASLATIVSYFSAEVSRGVWKPAFMNGMDWPSPATNLTNVEEHIKKILATTGIDIPSLAAGGTSPATLPLPLAAFLSLTITYKIDKASERFLNLAGPALESLAAGCPWPCMPIVASLWTQKAKRWFDFLVFSASRTVFLHNSDAVVQLLKSCFTATLGLNSNPISSNVGVGALLGHGFGSHFCGGISPVAPGILYLRVYRSMRDILFITEEIVSLLMHSVREIAFSGLPQEKMEKLKASKNGMRYGQVSLAAAITRVKLAASLGASLVWLSGGLGSVHSLIYETLPSWFISVHKSEHKYSDGLVSMLGGYALAYFAVLCGALAWGVDSSSLASKRRPKILGFHMEFLASALDGKISLGCDSATWHAYVSGFMSLMVSCTPTWVLEVDVEVLKRLSKGLKQWNEEELAIALLGIGGLGTMGAAAELIIEKDS
Length1091
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy0.210
Instability index45.40
Isoelectric point6.37
Molecular weight117790.76
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00708
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     131.85|      41|      56|     879|     934|       1
---------------------------------------------------------------------------
  879-  920 (60.63/28.59)	SVREIAFSGLPQEKMeKLKASKNGMRYGQVSLAAAITRVKLA
  936-  976 (71.21/50.68)	SVHSLIYETLPSWFI.SVHKSEHKYSDGLVSMLGGYALAYFA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     297.29|      97|     556|      15|     143|       2
---------------------------------------------------------------------------
   38-  138 (151.04/121.59)	LTPEDLLQLtSDTHLGLSQ..............ECKTSPQPKF.DAVLAFG........SLASS.AGLCHGASRSALWLPLDLVLEDALDgYQVNATSA..IEIITSLIKTLQAinGTTW..HETFLGL
  501-  596 (78.36/30.88)	LTPEYLLSV.RNSHLLSSQsihqdrnkrrlsaaASSSSPEPIFvDSFPKLKvwyrqhqrCIAATlSGLVHG...TQVHQTVDELLSMMFR..KINRASQ.gLN..........................
  717-  777 (67.89/27.10)	...........................................................SLA...AG...GTSPATLPLPLAAFLSLTIT.YKIDKASErfLNLAGPALESLAA..GCPWpcMPIVASL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      84.89|      25|      56|     994|    1018|       3
---------------------------------------------------------------------------
  994- 1018 (45.06/32.54)	KRRPKIL.GFHMEFLASALDGKISLG
 1052- 1077 (39.82/27.79)	KRLSKGLkQWNEEELAIALLGIGGLG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.01|      27|     338|     468|     498|       4
---------------------------------------------------------------------------
  468-  498 (46.74/42.30)	VF...SNAFALLLK.....LWRFNHPPIEHGVGdvptVG
  797-  831 (35.27/21.36)	VFlhnSDAVVQLLKscftaTLGLNSNPISSNVG....VG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     190.36|      61|     345|     265|     363|       6
---------------------------------------------------------------------------
  294-  363 (94.37/115.99)	PGYVNGHINQIPNTVPAQ....VPGWSSFTKGAPLTPLMVNALV.SSPASSLAELEkvfeIAIKgaddeKIFAAT
  646-  711 (95.99/47.46)	PRELATGLKDLADFLPASlatiVSYFSAEVSRGVWKPAFMNGMDwPSPATNLTNVE....EHIK.....KILATT
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00708 with Med33 domain of Kingdom Viridiplantae
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