<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00700

Description Uncharacterized protein (Fragment)
SequenceQYMSPYDPDEGPSITGWRVQRWESSVQPVVLHQIFGNPTSSFGGQAPMQTVWVSKVDTSIPTSNFKIHQLAAAGPTCDVWKTTDSGLEKSKIVSFDPFDLPSDIRSLARIVYSAHGGEIAIALLRGGVHIFSGPNFAPVDNYQISVGSAIAAPAFSSTSCCSASVWHDTNKDRTILKIIRVLPPAVPSSQVKANSSTWERAIAERFWWSLLVNVDWWDAVGCTQSAAEDGIVSLNSVIAVLDADFHSLPSIQHRQQYGPSLDRIKCRLLEGTNAQEVRAMVLDMQARLLLDMLGKGIESALINPSALVPDPWQASGETLSGIDPEAMAVEPALVASIQAYVDAVLDLASHFITRLRRYASFCRTLASHAVTAGTGSNRNMVASPTQSSATPAASQAGQSGTTSSTGSTQMQAWVQGAIAKISSTNDGVSNPTSNPISGPSSFMPISINTGTFPGTPAVRLIGDCHFLHRLCQLLLFCFFFRRAQQPRLLANAQRNNDANVQKPQVSAPGKVEEINSVPGKPTSAMVKLDEGQVARAGQTVPGAKGVEEGPAGRPKMGFGNAGQGYTFEEVKVLFLILMDLCRRTAALSHPLPVSQVGSSNIQVRLHYIDGNYTVLPEVVEASLGPHMQVPVSLCKYC
Length637
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.057
Instability index36.77
Isoelectric point6.74
Molecular weight68321.81
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of transcription, DNA-templated	GO:0006355	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00700
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.35|      14|      15|     340|     353|       1
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  340-  353 (24.54/18.71)	YVDAVLDLASHFIT
  358-  371 (25.81/20.07)	YASFCRTLASHAVT
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      49.05|      14|      15|     383|     396|       2
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  383-  396 (24.35/14.23)	SPTQSSATPAASQA
  399-  412 (24.70/14.54)	SGTTSSTGSTQMQA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.46|      10|      17|     302|     311|       4
---------------------------------------------------------------------------
  302-  311 (18.92/11.26)	INPSALVPDP
  322-  331 (18.54/10.88)	IDPEAMAVEP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     158.59|      50|     114|     415|     472|       5
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  415-  472 (75.04/54.17)	QGAIAKISSTNDGVSNPTSNPISGPSsfMPISiNTG...TFPGTPAVRLIgdchfLHRLCQ
  530-  582 (83.56/40.47)	EGQVARAGQTVPGAKGVEEGPAGRPK..MGFG.NAGqgyTFEEVKVLFLI.....LMDLCR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     185.52|      56|      88|      42|     102|       6
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   42-  102 (90.12/61.46)	FGGQ..APMQTVWVSkVDTSIPTSNFKIHQLAAAgptcDVWKTTDSGLEKSKIVSFDPFDLPS
  131-  188 (95.40/51.68)	FSGPnfAPVDNYQIS.VGSAIAAPAFSSTSCCSA....SVWHDTNKDRTILKIIRVLPPAVPS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00700 with Med16 domain of Kingdom Viridiplantae
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