<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00689

Description Uncharacterized protein
SequenceMAVNHQQQSLWREVLELTKTAQDRNTDPLTWAIQLSSTLNSAADGDGPTLPSTELAHLLVSHICWDNHVPITWKFLEKALTLKIVPPSLVLALLSTRVISNRQLHPAAYRLYLEFLTRHAFSFASLVNGPNYDKIMNSIDDVLNLSQIFGLKVCESGVLLVEFVFSVVWQLLDASLDDEGLLEFASDKNFKWPTRPQDMEIDGIDGFIDKRSEHHEGLFRANTTMAIELIGEFLQNKVTSRILYLAHMNMPSHWGGFIERLRLLALKSAALRNSKVITPEALLQLASDTRGDLGRKSKTAPQKECHAVAFPGSLMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGISSYCLLCELLYLLC
Length976
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy0.121
Instability index43.42
Isoelectric point5.55
Molecular weight106649.60
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00689
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     202.95|      63|      68|      76|     140|       1
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   76-  140 (99.36/79.42)	LEKALTLKIVPPSLVLALLSTRVIsnRQLHPAAY..RLYLEFLTRHAFSFASLVNGPNYDKIMNSID
  145-  209 (103.59/76.04)	LSQIFGLKVCESGVLLVEFVFSVV..WQLLDASLddEGLLEFASDKNFKWPTRPQDMEIDGIDGFID
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     224.59|      74|     387|     404|     540|       2
---------------------------------------------------------------------------
  444-  540 (105.67/152.83)	GRRRKDLvtSLQLLGDFEDMLTPPPFVRSIANQAAAKAimfisgltvgngyyeSVSMNGLATSclgnMRHLivEACIARNLLDTSAY........LW.PGYVNASD
  847-  929 (118.93/56.80)	GSGLEDV..SIKLKVPAWDILEATPFVLDAALAACAHG...............RLSPRELATG....LKEL..SDCLPATLATVVSYfsaevtrgLWkPAFMNGTD
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.04|      16|     195|     600|     617|       5
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  600-  617 (27.52/22.93)	CAATVLCGasLVRGWSVQ
  799-  814 (30.53/18.73)	CIASTLTG..LVHGTSVH
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---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      74.16|      19|      74|     703|     721|       9
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  703-  721 (36.00/25.61)	FSCYAVFSNAFTILVRLWR
  776-  794 (38.17/27.62)	FSTDPIFMDSFPKLKRWYR
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.82|      32|     302|     631|     663|      11
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  631-  663 (52.41/30.48)	PVPA.DYSGSESH....LIGYAALLNTLLVGISSVdCI
  931-  967 (46.42/22.79)	PSPAtNLSSIEQQikkiLAATGVDVPTVAVGISSY.CL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      75.60|      25|     454|     277|     310|      12
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  277-  310 (37.06/41.93)	ITPEALLqlasdtrgdLGRKSK.....TAPQKECHAVAF
  741-  770 (38.54/23.80)	LSPEYLL.........LVRNSKlasfgTSPKDQMKSKRF
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00689 with Med33 domain of Kingdom Viridiplantae
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