<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00686

Description Uncharacterized protein
SequenceMCIYFYAYSKLSLYFHRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQQLQQQQQQQQHQQMQSQLQHQQLSQLQQQQQQLPQLQQQIPQLQQQQQIPQLQQQSMPQLQQQQQLPQLQQQQQLPQMQQQQQLPQLQQQQQLSQPQQMVGSGMGQGYVQGPGRTQLVSQGQVSSQGAPNIPGGGFMS
Length818
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.375
Instability index60.46
Isoelectric point8.93
Molecular weight87630.06
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00686
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.97|      15|      15|     741|     755|       1
---------------------------------------------------------------------------
  730-  746 (25.25/ 6.23)	PQL.QQQSMpqlQQQQQL
  747-  764 (29.49/ 8.57)	PQLQQQQQLpqmQQQQQL
  765-  779 (32.23/10.08)	PQLQQQQQL...SQPQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.36|      13|      15|     697|     711|       3
---------------------------------------------------------------------------
  697-  711 (16.75/11.42)	QLQhQQLSQLqQQQQ
  715-  727 (26.62/ 9.44)	QLQ.QQIPQL.QQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     268.10|      35|      36|     374|     408|       4
---------------------------------------------------------------------------
  257-  298 (32.35/ 7.82)	GINrppiSVGNVPTAtvkVEPS..T.....VTSMVNGP.TFPH.IPSVPRP
  302-  334 (39.30/11.05)	GVP....SLQTSSPS...STSQ..E.....MITSG..D.SVPE.VKPLVSG
  338-  370 (29.86/ 6.66)	PLR....PM..APAA...ANVNilN.....NLSQ..AR.QVMN.NAALTGG
  374-  408 (64.53/22.77)	GLQ....SMGQTPMA...MHMS..N.....MISSGMAS.SVPT.SQPVFSS
  433-  458 (34.25/ 8.70)	GLN....SFTSAP........S..N.....L..SG..N.SNPSiSQP.MGT
  461-  495 (36.79/ 9.88)	GGA....SMGQS.VG...MSQG..NhsggqMVQNG.....ISM.NQNMMSG
  504-  533 (31.02/ 7.20)	GTG....TMIPTP......GMS..Q.....QAQSGMQPlSVNN.NTAV...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     134.54|      33|      70|     117|     149|       5
---------------------------------------------------------------------------
  117-  135 (27.59/ 9.27)	................................AASNPHPL..........P..TPVYRPQMQN
  136-  188 (36.18/14.12)	LDQNENNEAQAESRlsdaetvaksfvqcsvslSVICPKQL..........PklTAIYNAAKRN
  192-  226 (32.58/12.09)	ADPPVDN..........................SKNPHFLvlisenfmeaR..AALSRPGVAN
  227-  253 (38.18/15.26)	LAPNQNPVKMDIAP..................VTSVTGPA..........P..TSI..P....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.01|      18|      60|     567|     586|       7
---------------------------------------------------------------------------
  557-  574 (31.89/15.50)	EG..SLSGQRQG....QPVF.ITKL
  575-  599 (16.12/10.94)	EGyrSASASETLaanwPPTMqIVRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.01|      14|      19|     780|     793|       9
---------------------------------------------------------------------------
  780-  793 (28.00/11.74)	VGSGM..GQGYVQGPG
  798-  813 (22.01/ 7.63)	VSQGQvsSQGAPNIPG
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00686 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQT
2) KVEPSTVTSMVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLR
3) LSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTAT
4) QLSQPQQMVGSGMGQGYVQGPGRTQLVSQGQVSSQGAPNIPGGGFMS
358
274
219
772
541
340
272
818










Molecular Recognition Features






MoRF SequenceStartStop




NANANA