<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00684

Description Uncharacterized protein
SequenceMSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQQLQQQQQQQQHQQMQSQLQHQQLSQLQQQQQQLPQLQQQIPQLQQQQQIPQLQQQSMPQLQQQQQLPQLQQQQQLPQMQQQQQLPQLQQQQQLSQPQQMVGSGMGQGYVQGPGRTQLVSQGQVSSQGAPNIPGGGFMS
Length833
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.364
Instability index60.01
Isoelectric point8.50
Molecular weight89023.60
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00684
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      61.72|      15|      15|     756|     770|       1
---------------------------------------------------------------------------
  762-  779 (29.49/ 8.03)	PQLQQQQQLpqmQQQQQL
  780-  794 (32.23/ 9.48)	PQLQQQQQL...SQPQQM
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     104.41|      21|      21|     425|     445|       3
---------------------------------------------------------------------------
  292-  312 (23.66/ 8.08)	PSTVTSMVNGPTFPHIPSVPR
  425-  445 (35.46/16.49)	QSGITSIGGSGTLTGTSQVPQ
  475-  491 (23.61/ 8.04)	QGG.ASMGQS...VGMSQGNH
  534-  554 (21.68/ 6.67)	QSGMQPLSVNNNTAVNMQLSQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      91.96|      18|      21|     688|     705|       4
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  688-  705 (36.08/12.76)	QISSQ.QQQQLQQ.QQQQQQ
  708-  727 (28.09/ 8.19)	QMQSQlQHQQLSQlQQQQQQ
  744-  760 (27.78/ 8.01)	.IPQL.QQQSMPQ.LQQQQQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      62.70|      15|      50|     136|     150|       5
---------------------------------------------------------------------------
  136-  148 (21.74/10.76)	..PHPLPTPV...YRPQM
  202-  219 (20.53/ 9.68)	RNPRAADPPVdnsKNPHF
  225-  239 (20.43/ 9.60)	ENFMEARAAL...SRPGV
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      79.92|      21|      49|     454|     474|       6
---------------------------------------------------------------------------
  336-  366 (23.90/ 6.30)	SGDSVPE.VkplvsgmSQPLRPM...........................APaaaNVNI
  460-  507 (25.12/ 6.97)	SGNSNPS.I.......SQPMGTLqggasmgqsvgmsqgnhsggqmvqngiSM...NQNM
  509-  529 (30.90/10.17)	SG.LGPSgV.......SSGTGTM...........................IP...TPGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      44.11|      16|      19|     243|     261|       7
---------------------------------------------------------------------------
  255-  272 (18.18/14.33)	PVTSVtGpAPTSIPSVNG
  276-  291 (25.93/ 9.00)	PPISV.G.NVPTATVKVE
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      47.52|      17|      57|     389|     405|      10
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  368-  390 (20.44/ 8.56)	NNLSQARQVMNNAALtggtsiGL
  391-  410 (27.08/13.96)	QSMGQTPMAMHMSNM...issGM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.01|      14|      19|     795|     808|      11
---------------------------------------------------------------------------
  795-  808 (28.00/12.09)	VGSGM..GQGYVQGPG
  813-  828 (22.01/ 7.86)	VSQGQvsSQGAPNIPG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00684 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQT
2) KVEPSTVTSMVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLR
3) LSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTAT
4) QLSQPQQMVGSGMGQGYVQGPGRTQLVSQGQVSSQGAPNIPGGGFMS
373
289
234
787
556
355
287
833










Molecular Recognition Features






MoRF SequenceStartStop




NANANA