<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00683

Description Uncharacterized protein
SequenceMSEKQLIVAVEGTAAMGPYWQSIVSDYLEKIIRCFCVNELAGQKTSASNVELSLVTFNTHGSYCACLVQRSGWTKDVDIFLHWLSTIPFAGGGFNDAAIAEGLSEALMMFSVAPNGSQNQQNVDGQRHCILVAASNPHPLPTPVYRPQMQNLDQNENNEAQAESRLSDAETVAKSFVQCSVSLSVICPKQLPKLTAIYNAAKRNPRAADPPVDNSKNPHFLVLISENFMEARAALSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTATVKVEPSTVTSMVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLRPMAPAAANVNILNNLSQARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQTSSALHSSQSKYVKVWEGSLSGQRQGQPVFITKLEGYRSASASETLAANWPPTMQIVRLISQDHMNNKQYVGKADFLVFRAMNQHGFLGQLQEKKLCAVIQLPSQTLLLSVSDKACRLIGMLFPGDMVVFKPQISSQQQQQLQQQQQQQQHQQMQSQLQHQQLSQLQQQQQQLPQLQQQIPQLQQQQQIPQLQQQSMPQLQQQQQLPQLQQQQQLPQMQQQQQLPQLQQQQQLSQPQQMVGSGMGQGYVQGPGRTQLVSQGQVSSQGAPNIPGGGFMS
Length834
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.04
Grand average of hydropathy-0.368
Instability index59.95
Isoelectric point8.65
Molecular weight89151.77
Publications









Function






Annotated function


GO - Cellular Component
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of transcription by RNA polymerase II	GO:0045944	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00683
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.97|      15|      15|     757|     771|       1
---------------------------------------------------------------------------
  746-  762 (25.25/ 6.08)	PQL.QQQSMpqlQQQQQL
  763-  780 (29.49/ 8.43)	PQLQQQQQLpqmQQQQQL
  781-  795 (32.23/ 9.95)	PQLQQQQQL...SQPQQM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.36|      13|      15|     713|     727|       3
---------------------------------------------------------------------------
  713-  727 (16.75/13.92)	QLQhQQLSQLqQQQQ
  731-  743 (26.62/11.47)	QLQ.QQIPQL.QQQQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             7|     268.10|      35|      36|     390|     424|       4
---------------------------------------------------------------------------
  273-  314 (32.35/ 8.74)	GINrppiSVGNVPTAtvkVEPS..T.....VTSMVNGP.TFPH.IPSVPRP
  318-  350 (39.30/12.31)	GVP....SLQTSSPS...STSQ..E.....MITSG..D.SVPE.VKPLVSG
  354-  386 (29.86/ 7.47)	PLR....PM..APAA...ANVNilN.....NLSQ..AR.QVMN.NAALTGG
  390-  424 (64.53/25.25)	GLQ....SMGQTPMA...MHMS..N.....MISSGMAS.SVPT.SQPVFSS
  449-  474 (34.25/ 9.72)	GLN....SFTSAP........S..N.....L..SG..N.SNPSiSQP.MGT
  477-  511 (36.79/11.02)	GGA....SMGQS.VG...MSQG..NhsggqMVQNG.....ISM.NQNMMSG
  520-  549 (31.02/ 8.07)	GTG....TMIPTP......GMS..Q.....QAQSGMQPlSVNN.NTAV...
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     134.54|      33|      70|     133|     165|       5
---------------------------------------------------------------------------
  133-  151 (27.59/10.85)	................................AASNPHPL..........P..TPVYRPQMQN
  152-  204 (36.18/16.43)	LDQNENNEAQAESRlsdaetvaksfvqcsvslSVICPKQL..........PklTAIYNAAKRN
  208-  242 (32.58/14.09)	ADPPVDN..........................SKNPHFLvlisenfmeaR..AALSRPGVAN
  243-  269 (38.18/17.74)	LAPNQNPVKMDIAP..................VTSVTGPA..........P..TSI..P....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      48.01|      18|      60|     583|     602|       7
---------------------------------------------------------------------------
  573-  590 (31.89/17.70)	EG..SLSGQRQG....QPVF.ITKL
  591-  615 (16.12/12.51)	EGyrSASASETLaanwPPTMqIVRL
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      50.01|      14|      19|     796|     809|       9
---------------------------------------------------------------------------
  796-  809 (28.00/12.82)	VGSGM..GQGYVQGPG
  814-  829 (22.01/ 8.37)	VSQGQvsSQGAPNIPG
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      35.33|      11|      18|     651|     661|      10
---------------------------------------------------------------------------
  651-  661 (20.06/11.45)	KLCAVIQL..PSQ
  670-  682 (15.26/ 6.71)	KACRLIGMlfPGD
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00683 with Med25 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ARQVMNNAALTGGTSIGLQSMGQTPMAMHMSNMISSGMASSVPTSQPVFSSAQSGITSIGGSGTLTGTSQVPQNSGLNSFTSAPSNLSGNSNPSISQPMGTLQGGASMGQSVGMSQGNHSGGQMVQNGISMNQNMMSGLGPSGVSSGTGTMIPTPGMSQQAQSGMQPLSVNNNTAVNMQLSQQT
2) KVEPSTVTSMVNGPTFPHIPSVPRPASQGVPSLQTSSPSSTSQEMITSGDSVPEVKPLVSGMSQPLR
3) LSRPGVANLAPNQNPVKMDIAPVTSVTGPAPTSIPSVNGINRPPISVGNVPTAT
4) QLSQPQQMVGSGMGQGYVQGPGRTQLVSQGQVSSQGAPNIPGGGFMS
374
290
235
788
557
356
288
834










Molecular Recognition Features






MoRF SequenceStartStop




NANANA