<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00677

Description Uncharacterized protein
SequenceMSLAGQCNGTSRSALWLPIDLFLEDAMDGTQVAATSAVEILTGLVKALQVVNGTTWHDTFLGLWIAALRLLQRERDPSEGPVPRIDSSLCMVLSVTTLTVADIIEEEESELIDETEQSPSNLPKDKQAPGRRRKDLVTSLQLLGDFEDMLTPPPFVRSIANQAAAKAIMFISGLTVGNGYYESVSMNGLATSCLGNMRHLIVEACIARNLLDTSAYLWPGYVNASDSNQVPCSIATQMSGWSSLMKGSPLTPSLTNALVVTPASSLAEIEKVYEIAVNGSDDEKICAATVLCGASLVRGWSVQENTILFIIKLLSPPVPADYSGSESHLIGYAALLNTLLVGISSVDCIQIFSLHGWVPLLAAALMPICEVFGSSIPNASWTLSSGEEFSCYAVFSNAFTILVRLWRFHKPPLEQLTVDMPLVASQLSPEYLLLVRNSKLASFGTSPKDQMKSKRFSKNIKFSTDPIFMDSFPKLKRWYRQNEECIASTLTGLVHGTSVHLIVDALLTKMFRKINRSGTPLTSATSGSTNSSGSGLEDVSIKLKVPAWDILEATPFVLDAALAACAHGRLSPRELATGLKELSDCLPATLATVVSYFSAEVTRGLWKPAFMNGTDWPSPATNLSSIEQQIKKILAATGVDVPTVAVGGNSPATLPLPLAALVSLTITFKLDKASDRFLALVGLGLSSLASSCPWPCMPIVASLWAQKVKRWNDFLVFSASGTVFHYNTDAVVQLLKSCFTSTLGLTSSHNYSNGGVGALLGHGFGSHFSGGISPVGPGILYLRVHRSVRDVMFMKEEILSILMHCVRDIASCGLPREKLEKLKKTKHGMRYGQVSLAAAMTRAKLAASLGASLVWISGGSSLVHSLLTETLPSWFISVHGLVQEGGESGCMVGMLGGYALAYFAVFCATFAWGVDSESRASKKRPTVLGTHLEFLASALDRKISVGCDCATWRAYVSGFVTLIVGCTPTWMLEINVDALKRLSKGLRQWDEEELALTLLGVGGVGAMGAAAQLIVESKI
Length1019
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy0.244
Instability index43.04
Isoelectric point6.44
Molecular weight109369.27
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IEA:InterPro

GO - Biological Function
GO - Biological Process
regulation of phenylpropanoid metabolic process	GO:2000762	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00677
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.50|      36|      71|     372|     407|       1
---------------------------------------------------------------------------
  318-  345 (29.20/13.09)	....VP....ADY...SGSEshLIGYAALLN..TLLVGISS
  372-  407 (67.80/39.79)	FGSSIPN...ASWTLSSGEE..FSCYAVFSNAFTILVRLWR
  443-  480 (56.50/31.97)	FGTS.PKdqmKSKRFSKNIK..FSTDPIFMDSFPKLKRWYR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     416.80|     140|     235|     496|     650|       2
---------------------------------------------------------------------------
  496-  650 (208.23/169.68)	GTSVHLIVDA...LLTKMFRkinrSGTPLTSAT...................SGSTNSSGSGLedvsIKLKV..PAWDILEATPFVLdAALAACAHGRLS...PRELATGLKELSDCLPATLatvVSyFSAEVTRGLWKPAFMNGTDWPSPATNLssIEQQIKKILAATGVDVPT.VAVGGNS
  721-  888 (208.57/132.35)	GTVFHYNTDAvvqLLKSCFT....STLGLTSSHnysnggvgallghgfgshfSGGISPVGPGI....LYLRVhrSVRDVMFMKEEIL.SILMHCVRDIAScglPREKLEKLKKTKHGMRYGQ...VS.LAAAMTRAKLAASLGASLVWISGGSSL..VHSLLTETLPSWFISVHGlVQEGGES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.86|      18|     245|     417|     442|       3
---------------------------------------------------------------------------
  425-  442 (30.56/11.29)	SQLSPEYLLLV..RNSKLAS
  671-  690 (24.30/15.25)	DKASDRFLALVglGLSSLAS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      67.67|      20|      56|     222|     242|       4
---------------------------------------------------------------------------
  222-  242 (35.32/25.67)	VNASDSNQ.....VPCSiATQMSGWS
  277-  301 (32.35/18.46)	VNGSDDEKicaatVLCG.ASLVRGWS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     114.77|      34|      56|     889|     923|       8
---------------------------------------------------------------------------
  889-  923 (56.32/36.89)	GCMVGMLGGYALAYFAVF..CATfAWGVDSESRASKK
  946-  981 (58.45/33.67)	GCDCATWRAYVSGFVTLIvgCTP.TWMLEINVDALKR
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00677 with Med33 domain of Kingdom Viridiplantae
Unable to open file!