<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00676

Description Uncharacterized protein
SequenceMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS
Length1557
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.036
Instability index47.39
Isoelectric point6.56
Molecular weight174882.45
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00676
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     331.85|     107|     181|     140|     286|       1
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  140-  261 (159.14/105.56)	PLPSVHGIGSpaQSAIETSVCAA....MSPVKSSDVscTGQQFTTR.VNSSVRDNAISSLRQLCCkiiltgLEFSLKPVTHADIFYHMLNWLVTWDQKQQGidESDGKSWRLD...KALIEWLhscLDVI
  322-  436 (172.71/105.43)	PTFGTHRILS..QTTPNISVEAAgnlrYSPITYPSV..LGEPLHGEdLATSIQRGSLDWERAMRC......IRHAIRATPSPDWWKRVLLVAPCYRNPAQG..PTPGAVFTYDmisEAVIDRI...VELL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.69|      11|     241|     896|     906|       2
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  896-  906 (23.39/12.79)	KTYLSHSFPQH
 1140- 1150 (23.30/12.71)	KIPFSESFPQH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     303.44|     103|     323|    1013|    1138|       3
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  773-  861 (105.84/62.89)	..............CMN..LILSQRD.FFS...............LKREGKGSTEFTETLNR.ITVIALAI..IIKTRGIADADHVLYLQTMLeqimatsqhtwsektLRYFP...SLLRD...........ALIGRI
 1013- 1132 (161.81/156.77)	LLDRQELQQRVKLYCMN..RGPPEHW.LYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARlLPVIPLIVyrLIENDAMDSADRVLATYSSF...............LAYYPlrfSFVRDilayfyghlpgKLIVRI
 1336- 1380 (35.79/10.71)	LLAQLPPDFHMQLY.MEasRIIKESWwLADGKRSLGELDSAVGYAL............................................................................................
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.57|      28|     539|     937|     964|       4
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  937-  964 (50.94/29.51)	FSPEEV.TSNIYTMVDVLLHHIHVELQRG
 1474- 1502 (47.62/27.15)	LPPAPVeASEIADLIDFLHHVVHYEGQGG
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      97.19|      30|     236|     474|     503|       5
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  474-  503 (50.37/36.06)	LVSRLQDGDNHILRTNHVTWLLAQIIRVEL
  703-  732 (46.82/32.93)	LFSHLAQRNPSLLAKVGVTPLVLEIVNYRL
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     237.04|      81|    1181|      45|     134|      12
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   45-  134 (113.89/102.46)	TESVLISMVVQCCShVPRAEFILfaLRSLCSIgYINwdtFLPSLLSSVS...SAEMSAGQGSqAMPAV....SATSLQQSGMLPTSSGIpNSSNYQS
 1229- 1316 (123.15/75.97)	TQLVLETAVIEILS.LPVSASQI..VSSLVQI.VVN...IQPTLIQTSNgpyGASNSVGQGS.VLPTSpsggSTDSLGASRSTPSVSGI.NTSSFVS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     178.29|      55|     793|     619|     675|      13
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  619-  675 (92.20/56.27)	WLSSAG..VTELFPGSNLPPNErlMVMREVNPLPMSLLTGFSL.NLCLKLALQMEDSIFG
 1413- 1470 (86.09/47.25)	WLEGTHviIKHLRPITSVAMLR..IVFRIMGPLLPRLVNAHTLfNKTLALLLNTMGDVYG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00676 with Med23 domain of Kingdom Viridiplantae
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