<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00670

Description Uncharacterized protein
SequenceMDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPFFNLRLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS
Length1639
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.038
Instability index48.46
Isoelectric point6.68
Molecular weight183938.66
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
mediator complex	GO:0016592	IBA:GO_Central
transcription regulator complex	GO:0005667	IBA:GO_Central

GO - Biological Function
GO - Biological Process
positive regulation of gene expression	GO:0010628	IBA:GO_Central
regulation of transcription by RNA polymerase II	GO:0006357	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00670
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     436.18|     106|     181|     222|     368|       1
---------------------------------------------------------------------------
   42-  156 (133.38/68.54)	GRSSRQK.QDDSIRDPPFFNLRLLirglvaCCgGILLIVEEFMLRNKTQKRVL..ALNrelpprneqFLIDFEQLQSQFPDQDQLRSVTE...SVLIS...............MVVQC............CsHVPRAEFILFA.LRSLC
  257-  368 (172.98/141.67)	GQQFTTR.VNSSVRDNAISSLRQL......CC.KIILTGLEFSLKPVTHADIFYHMLN.........WLVTWDQKQQGIDESDGKSWRLD...KALIE...............WLHSCldviWLLVDEdrC.RVPFYELLRTG.LQFIE
  439-  551 (129.82/66.18)	GEPLHGEdLATSIQRGSLDWERAM......RC.......IRHAIRATPSPDWWKRVLL.........VAPCYRNPAQG..PTPGAVFTYDmisEAVIDrivellkltnsevncWHD......WLIFSD......VFFFLVKSGcIDFVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     348.83|     109|     181|    1242|    1375|       2
---------------------------------------------------------------------------
  160-  222 (70.99/28.67)	..............................................YINWD..TFLPSLLSS....VSSAEMSAG..Q....GSQAMPAVSATSLQqsgmlpTSSGIPNSSNY..QSSN.PASP
 1157- 1240 (108.67/85.92)	VIPLIVYRLIENDAMDSADRVLATYSSFLAYY.PLRFSFVRDilAYFYGHLPGKLIVRILN..VFDLSKIPFSESfpQHISSSNPVM.....................................
 1258- 1371 (169.16/113.04)	VIPALNYNSKSGSTMDASLRAPHNKSPMTSQSgPSNVSEGRK..EFYQNQDPGTYTQLVLETaVIEILSLPVSAS..QIVSSLVQIVVNIQPTLIQ......TSNGPYGASNSvgQGSVlPTSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     153.46|      42|     183|     929|     970|       7
---------------------------------------------------------------------------
  837-  861 (27.48/14.14)	.........ALkVKRGDHRVLRL.....AE....NLC....MNLILS
  863-  901 (50.14/32.28)	RDFFSLKRE....GK....GSTEFTETLNRITVIALAiiikTRGIAD
  929-  970 (75.83/52.85)	RYFPSLLRDAL.IGRIDKRGLTIQAWQQAETTVINQC....TQLLSP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      82.84|      24|     542|    1019|    1042|       8
---------------------------------------------------------------------------
 1019- 1042 (43.45/28.90)	FSPEEV.TSNIYTMVDVLLHHIHVE
 1556- 1580 (39.39/25.49)	LPPAPVeASEIADLIDFLHHVVHYE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.94|      44|     322|    1095|    1139|      10
---------------------------------------------------------------------------
 1095- 1139 (77.24/64.38)	LLDRQELQQRVKLYcMN..RGPPEHW.LYSGLFKRVELQKALGNHL...SW
 1418- 1467 (65.70/47.84)	LLAQLPPDFHMQLY.MEasRIIKESWwLADGKRSLGELDSAVGYALldpTW
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00670 with Med23 domain of Kingdom Viridiplantae
Unable to open file!