<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00666

Description Uncharacterized protein
SequenceMDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS
Length1611
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.064
Instability index48.18
Isoelectric point6.62
Molecular weight180746.70
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00666
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     320.84|     101|     181|     194|     340|       1
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  194-  306 (155.25/95.38)	PLPSVHGIGSPAQSAIetSVCAA....MSPVKSSdvSCTGQQFTTR.VNSSVRDNAISSLRQLCCkiiltgLEFSLKPVTHADIFYHMLNWLVTWDQKQQGidESDGKSWRLD...KALIE
  376-  484 (165.59/115.51)	PTFGTHRILSQTTPNI..SVEAAgnlrYSPITYP..SVLGEPLHGEdLATSIQRGSLDWERAMRC......IRHAIRATPSPDWWKRVLLVAPCYRNPAQG..PTPGAVFTYDmisEAVID
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      46.69|      11|     241|     950|     960|       2
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  950-  960 (23.39/14.73)	KTYLSHSFPQH
 1194- 1204 (23.30/14.64)	KIPFSESFPQH
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.94|      44|     323|    1067|    1111|       4
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 1067- 1111 (77.24/61.42)	LLDRQELQQRVKLYcMN..RGPPEHW.LYSGLFKRVELQKALGNHL...SW
 1390- 1439 (65.70/45.63)	LLAQLPPDFHMQLY.MEasRIIKESWwLADGKRSLGELDSAVGYALldpTW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     291.47|      97|     123|     657|     763|       5
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  657-  763 (143.79/116.66)	VVSYTM.....AQPACETVMNwlssaGVTELFPGSNLPPNERlMVMREVNPLPMSLLTG....FSLNLCLKLALQMEDSIFGGQVVAsIAMVeTYTRLMLLAPHSLFrsLFSHLAQ
  781-  886 (147.68/90.94)	IVNYRLlplyrYQGKTKTLMY.....DITKIISALKVKRGDH.RVLRLAENLCMNLILSqrdfFSLKREGKGSTEFTETLNRITVIA.LAII.IKTRGIADADHVLY..LQTMLEQ
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      95.92|      25|     180|     316|     340|       7
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  316-  340 (46.43/29.43)	WLL............VDEDRCRVPFYELLRTG.LQFIE
  503-  523 (29.88/16.34)	WLI............FSD.....VFFFLVKSGcIDFVD
  547-  578 (19.62/ 8.23)	WLLaqiirvelvmgaLNSDSRKV...ETTRKI.LSF..
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      94.38|      34|     180|    1284|    1347|       8
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  126-  181 (38.31/ 7.48)	SLCSIgYINwdtFLPSLLSSVS...SAEMSAGQGSqampavsatslqqsgMLPTSsgiP
 1307- 1343 (56.07/32.23)	SLVQI.VVN...IQPTLIQTSNgpyGASNSVGQGS...............VLPTS...P
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      98.57|      28|     537|     991|    1018|      10
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  991- 1018 (50.94/37.63)	FSPEEV.TSNIYTMVDVLLHHIHVELQRG
 1528- 1556 (47.62/34.63)	LPPAPVeASEIADLIDFLHHVVHYEGQGG
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00666 with Med23 domain of Kingdom Viridiplantae
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