<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00665

Description Uncharacterized protein
SequenceMDQNQSQRSSIGAATASSASSRAYQFHPARAAIIDLFNLYLGRSSRQKQDDSIRDPPLLIRGLVACCGGILLIVEEFMLRNKTQKRVLALNRELPPRNEQFLIDFEQLQSQFPDQDQLRSVTESVLISMVVQCCSHVPRAEFILFALRSLCSIGYINWDTFLPSLLSSVSSAEMSAGQGSQAMPAVSATSLQQSGMLPTSSGIPNSSNYQSSNPASPLPSVHGIGSPAQSAIETSVCAAMSPVKSSDVSCTGQQFTTRVNSSVRDNAISSLRQLCCKIILTGLEFSLKPVTHADIFYHMLNWLVTWDQKQQGIDESDGKSWRLDKALIEWLHSCLDVIWLLVDEDRCRVPFYELLRTGLQFIENIPDDEALFTLILEIHRRRDMMAMHMQMLDQHLHCPTFGTHRILSQTTPNISVEAAGNLRYSPITYPSVLGEPLHGEDLATSIQRGSLDWERAMRCIRHAIRATPSPDWWKRVLLVAPCYRNPAQGPTPGAVFTYDMISEAVIDRIVELLKLTNSEVNCWHDWLIFSDVFFFLVKSGCIDFVDFVDKLVSRLQDGDNHILRTNHVTWLLAQIIRVELVMGALNSDSRKVETTRKILSFHREDRCTDPNNPQSILLDFISSCQNLRIWSLNTSTREYLNNEQLQKGKQIDEWWRQVSKGDRMMDYMNMDDRSVGMFWVVSYTMAQPACETVMNWLSSAGVTELFPGSNLPPNERLMVMREVNPLPMSLLTGFSLNLCLKLALQMEDSIFGGQVVASIAMVETYTRLMLLAPHSLFRSLFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLPLYRYQGKTKTLMYDITKIISALKVKRGDHRVLRLAENLCMNLILSQRDFFSLKREGKGSTEFTETLNRITVIALAIIIKTRGIADADHVLYLQTMLEQIMATSQHTWSEKTLRYFPSLLRDALIGRIDKRGLTIQAWQQAETTVINQCTQLLSPSADPTYVKTYLSHSFPQHRQYLCAGAWILMQGHPENINSANLLRVLREFSPEEVTSNIYTMVDVLLHHIHVELQRGHSLQDLLFKACANISFFVLTHELLPLDILLLALIDRDDDPHALRIVITLLDRQELQQRVKLYCMNRGPPEHWLYSGLFKRVELQKALGNHLSWKERYPTFFDDIAARLLPVIPLIVYRLIENDAMDSADRVLATYSSFLAYYPLRFSFVRDILAYFYGHLPGKLIVRILNVFDLSKIPFSESFPQHISSSNPVMCPPLDYFATLLLGLVNNVIPALNYNSKSGSTMDASLRAPHNKSPMTSQSGPSNVSEGRKEFYQNQDPGTYTQLVLETAVIEILSLPVSASQIVSSLVQIVVNIQPTLIQTSNGPYGASNSVGQGSVLPTSPSGGSTDSLGASRSTPSVSGINTSSFVSRSGYTCQQLSCLLIQACGLLLAQLPPDFHMQLYMEASRIIKESWWLADGKRSLGELDSAVGYALLDPTWAAQDNTSTAIGNIVALLHSFFSNLPQEWLEGTHVIIKHLRPITSVAMLRIVFRIMGPLLPRLVNAHTLFNKTLALLLNTMGDVYGKNTLPPAPVEASEIADLIDFLHHVVHYEGQGGPVQASSKPRPEVLVLTGRAAESLRPEVQHLLSHLKPDVNSSIYAATHPKMVQNPS
Length1634
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.08
Grand average of hydropathy-0.039
Instability index48.34
Isoelectric point6.62
Molecular weight183260.87
Publications









Function






Annotated function


GO - Cellular Component
integral component of membrane	GO:0016021	IEA:UniProtKB-KW
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00665
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     436.11|     106|     181|     217|     363|       1
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   42-  151 (132.85/72.47)	GRSSRQK.QDDSIRDPPL.LIRGLvaCCgGILLIVEEFMLRNKTQKRVL..ALNrelpprneqFLIDFEQLQSQFPDQDQLRSVTE...SVLIS...............MVVQC............CsHVPRAEFILFA.LRSLC
  252-  363 (172.63/150.45)	GQQFTTR.VNSSVRDNAISSLRQL..CC.KIILTGLEFSLKPVTHADIFYHMLN.........WLVTWDQKQQGIDESDGKSWRLD...KALIE...............WLHSCldviWLLVDEdrC.RVPFYELLRTG.LQFIE
  434-  546 (130.63/70.90)	GEPLHGEdLATSIQRGSLDWERAM..RC.......IRHAIRATPSPDWWKRVLL.........VAPCYRNPAQG..PTPGAVFTYDmisEAVIDrivellkltnsevncWHD......WLIFSD......VFFFLVKSGcIDFVD
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     348.83|     109|     181|    1237|    1370|       2
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  155-  217 (70.99/30.93)	..............................................YINWD..TFLPSLLSS....VSSAEMSAG..Q....GSQAMPAVSATSLQqsgmlpTSSGIPNSSNY..QSSN.PASP
 1152- 1235 (108.67/92.36)	VIPLIVYRLIENDAMDSADRVLATYSSFLAYY.PLRFSFVRDilAYFYGHLPGKLIVRILN..VFDLSKIPFSESfpQHISSSNPVM.....................................
 1253- 1366 (169.16/121.47)	VIPALNYNSKSGSTMDASLRAPHNKSPMTSQSgPSNVSEGRK..EFYQNQDPGTYTQLVLETaVIEILSLPVSAS..QIVSSLVQIVVNIQPTLIQ......TSNGPYGASNSvgQGSVlPTSP
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     201.92|      68|     241|     551|     622|       5
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  551-  622 (106.91/84.99)	LVSRLQDGDNHILRTNHVTWLLAQIIRVELV........MGALNSDSRKVETTRKIlsfHRED....RCTDpNNPQSILL...DFIS
  780-  862 (95.01/62.86)	LFSHLAQRNPSLLAKVGVTPLVLEIVNYRLLplyryqgkTKTLMYDITKIISALKV...KRGDhrvlRLAE.NLCMNLILsqrDFFS
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     142.94|      44|     322|    1090|    1134|       8
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 1090- 1134 (77.24/62.48)	LLDRQELQQRVKLYcMN..RGPPEHW.LYSGLFKRVELQKALGNHL...SW
 1413- 1462 (65.70/46.44)	LLAQLPPDFHMQLY.MEasRIIKESWwLADGKRSLGELDSAVGYALldpTW
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      54.49|      15|     267|     402|     430|      10
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  402-  416 (27.22/42.54)	GTHRILSQTTPNISV
 1493- 1507 (27.27/ 7.85)	GTHVIIKHLRPITSV
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00665 with Med23 domain of Kingdom Viridiplantae
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