<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00656

Description Uncharacterized protein
SequenceMQSNISADNQRNGLGTRQDQHQQSQQQLLTHNIHQPYAGNLCIEDILSVHCYQQQQNIASQSNSFQFSQNQTLNTESQQPPFSEQSSAAVFQPNQLVPQGNNIGQQLSPFQKTMPNSYQQPDGLQSNASCLQQQHRVTGAELKVMNMKSHEHSAHILQVEDTSLPSKVEQSVQSVNNFHQLLYSPKQSKKETTHQRPDTLAAMVTPRIVNNQQNVLPAVKNMTEVSSVLSPVPSLETGAPSEQANMAEFHDQMYQKLEQQNASSSLQDAARPEGHDIGGAQQIKSSNGATGRSFYPATKLPPQNFVKNAFPQQRQLKHQMRQTENVRQQMQPQFSQKKMQHMQMANIKPVATSDMLQQNPLISQQSDNSHQMPLPTTPHHFQYPSHMSQHSSAQVYQKNLPLALSKLGTLSYSANSPSITSSPSIPFTPFSIPADSENHPSDISSLLISKNLGHPQRTLSLNLVDTENEVTTQFLPVAQAGISASSFPTESSSPNYEQQSSAMKEPLERLLNAVQSLSPKTLSASVREIGSALKTVDAISGTACNDSGVDVDENLVSATTCCMHGRNFSLQSGCSSEAKMEDKTNPIALDETDSIKQSAGQIWDIDTSRIIKRRRVEGLICIDYSQPSNTLLDEIKCINQWLIETEIDLDSSEDPAALDAGEGTIVRCVYSAVALDENFKMQFASQILPLPLRLFVPASYPNASPVILGGLSFDWR
Length716
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.05
Grand average of hydropathy-0.592
Instability index67.88
Isoelectric point5.75
Molecular weight78995.15
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00656
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     468.35|      73|      74|      97|     170|       1
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   36-   95 (69.05/26.45)	.PYAGNlcIEDIL.S......VHCYQQQQNIASQSN..SFQ....fSQNQTLNTESQQPPF.SEQSSAAVFQ...........PNQ
   97-  170 (115.86/52.00)	VPQGNN..IGQQL.SPFQKTMPNSYQQPDGLQSNAS..CLQ.....QQHRVTGAELKVMNMKSHEHSAHILQVE..DTSLPSkVEQ
  172-  243 (78.91/31.22)	VQSVNN..FHQLLySPKQSKKETTHQRPDTLAAMVTprIVN.....NQQNVLPA...VKNMT..EVSSVLSPVPslETGAPS..EQ
  245-  302 (56.32/20.09)	...........NM.AEFHDQM...YQKLEQ.QNASS..SLQdaarpEGHDIGGA....QQIKSSNGATGRSFYP..ATKLPP....
  304-  358 (62.80/23.23)	.....N..FVKNA.FPQQRQLKHQMRQTENVRQQMQ..PQF.....SQKKM..QHMQMANIKPVATSDMLQQ..............
  362-  426 (85.42/34.18)	ISQQSD..NSHQM..PL.PTTPHHFQYPSHMSQHSS..AQV.....YQKNLPLALSKLGTLSYSANSPSI..TS..SPSIP.....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     139.11|      48|      74|     495|     546|       2
---------------------------------------------------------------------------
  495-  546 (68.16/51.16)	NYEQQSSAMKE........PLErlLNAVQSLspKTLSASVREIG.SALKTVDAISGTACND
  567-  623 (70.95/41.29)	NFSLQSGCSSEakmedktnPIA..LDETDSI..KQSAGQIWDIDtSRIIKRRRVEGLICID
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00656 with Med15 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) GAELKVMNMKSHEHSAHILQVEDTSLPSKVEQS
2) MQSNISADNQRNGLGTRQDQHQQSQQQLLTH
3) SNSFQFSQNQTLNTESQQPPFSEQSSAAVFQPNQLVPQGNNIGQQLSPFQKTMPNSYQQPDGLQSNASCLQ
4) SSVLSPVPSLETGAPSEQANMAEFHDQMYQKLEQQNASSSLQDAARPEGHDIGGAQQIKSSNGATGRSFYPATKLPPQNFVKNAFPQQRQLKHQMRQTENVRQQMQPQFSQKKMQHMQMANIKPVATSDMLQQNPLISQQSDNSHQMPLPTTPHHFQYPSHMSQH
5) VNNFHQLLYSPKQSKKETTHQRPDTLAAMVTPRIVNNQQNVLP
139
1
62
226
175
171
31
132
390
217










Molecular Recognition Features






MoRF SequenceStartStop




NANANA