<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00654

Description Uncharacterized protein
SequenceMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMLSAGVQGSSGLSSALPSVSGLSQSPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGRQQVLPQQQQQQSQNSQQFLYHQQYPQQPLNKKLQQGGLSHTLMQPQIQQQPQQQPNLLQPNQLQSSQQSGMQTSSVMPNMMQSAPLPGLQQNQQSSVQQSTQPMMQQHPQSVLRPQQQQQQTVGIHQQQTPMPQQSVMPPQQQQQQQLMGQQPNTVNMQQSQLIGQQNNVGDMQQQQRLLGQQSNLPNLQQQQQQQQQQQQQQQQQQQLMAQQNLSSMHHQQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDWQEEVYQKIKTMKEMYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKIFKTMLERIITFLQVSKSNILPGFKEKLGSYEKQIVNFISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINALQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFPISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSGTPLQSVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTSSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPRIEANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQYASAQMVRFFAFQKGIKSLLSSAFLCIYSCFHELQSPIQPLRLLVPTNYPNCSPILLDKFPVEISKEYEDLSVKAKSRFSISLRSLSQPMSLGEIARTWDVCARTVISEYAQQSGGGSFSSKYGTWENCLSAA
Length1294
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.03
Grand average of hydropathy-0.752
Instability index73.49
Isoelectric point9.32
Molecular weight142343.87
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IBA:GO_Central
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00654
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             9|     586.46|      59|      59|     240|     298|       1
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  106-  140 (50.02/ 7.32)	RQQVLPQQQQ....QQS...Q.........NSQ..QFLYHQ......QY..PQQP..LNK.......KLQ
  145-  198 (74.56/15.85)	SHTLMQPQIQ....QQP...Q...QQPNL..LQPNQLQSSQQS.G.MQT..SSVMpnMMQSAPLPGLQQN
  200-  239 (54.28/ 8.80)	QSSV....QQ....STQ...PMMQQHPQSVLRPQQQ...QQQTVG.IHQ..QQ........TPMP.....
  240-  298 (118.66/31.17)	QQSVMPPQQQ....QQQ...QLMGQQPNTVNMQQSQLIGQQNNVGDMQQ..QQRL..LGQQSNLPNLQQQ
  301-  359 (84.67/19.36)	QQQQQQQQQQ....QQQ...QLMAQQ.NLSSMHHQQL.GPQSNVSGLQQqpQQQL..LGTQSGNSSMQTN
  367-  406 (49.77/ 7.24)	QQPKVPVQQQ....MQQsapNLL...PNQGQQQQSQ...........PQ..QQQM..MSQ......IQ..
  407-  446 (51.99/ 8.01)	....SQPTQL....QQQ...LGLQQQPNP..LQR...........DMQQ..RLQA..SGQAS..ASLLQP
  690-  738 (55.67/ 9.29)	.NSVSAPQQA....SIN...NL.PSQ.SGVNMLQSNINALQSNSNMMQH..QH....LKQHQE.....QQ
  742-  775 (46.84/ 6.22)	SQQLKQMQQRhmqfQKQ...QLMQQQ......................Q..QQQ....HQQQ.....QHQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     148.79|      34|      51|       5|      41|       2
---------------------------------------------------------------------------
    5-   38 (58.02/17.93)	VHNQGQSLPIPLSANQSQVRQQL..LSQ.NIQNNMLS
   54-   85 (39.96/ 8.41)	VSGLSQS.PIPSVVGQTVNMQNMsgISQ.NSGGN...
  585-  617 (50.81/11.72)	MQQQGQ.LP.PTHMHSMQQQQSQ..ISQgQPHDNQMN
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|     281.68|      59|      59|     786|     844|       3
---------------------------------------------------------------------------
  619-  665 (63.24/20.13)	..........QIQSMNLAGSMVTMQPNNV.TNVQHNSVPSVSGVSTSQQN.MLNS.......VQ...P.G
  787-  845 (101.71/37.37)	PAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQP.LKPG.......AQF..P.I
  856-  899 (58.80/18.15)	P.QIPQHSSPQVDQQN......LLQSIT.KSGTPLQSVNS.........PfVVPS.......PST..PmA
  900-  957 (57.93/17.76)	PSPMPGDSEKPISGISSLSN.........AGNIGHQQTSSAQAAAPSLAI.GTPGisaspllAEFtgP..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      43.31|      17|      17|     487|     503|       4
---------------------------------------------------------------------------
  500-  519 (21.97/11.25)	YLPE..lNEMYQKIaaKLQQHD
  520-  539 (21.33/10.68)	SLPQqpkSDQLEKL..KIFKTM
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      60.42|      17|      17|    1158|    1174|       6
---------------------------------------------------------------------------
 1158- 1174 (29.50/21.91)	LKSQYASAQMVRFFAFQ
 1177- 1193 (30.92/23.38)	IKSLLSSAFLCIYSCFH
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      58.78|      19|      59|     988|    1006|       7
---------------------------------------------------------------------------
  988- 1006 (32.11/23.42)	SMSPKALSASVSDIG.SVVS
 1047- 1066 (26.67/17.86)	SSGPRKMRRYTSAMPlSVVS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      41.44|      13|     516|     558|     579|       9
---------------------------------------------------------------------------
  541-  553 (19.91/23.97)	ERIITFLQVSKSN
  567-  579 (21.53/ 6.10)	KQIVNFISTNRPR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      64.72|      18|      32|     448|     465|      10
---------------------------------------------------------------------------
  448-  465 (32.33/19.37)	NVMDQQKQLYQPQRALPE
  481-  498 (32.40/19.43)	NGVDWQEEVYQKIKTMKE
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00654 with Med15 domain of Kingdom Viridiplantae
Unable to open file!