<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00653

Description Uncharacterized protein
SequenceMQNQVHNQGQSLPIPLSANQSQVRQQLLSQNIQNNMLSAGVQGSSGLSSALPSVSGLSQSPIPSVVGQTVNMQNMSGISQNSGGNSMGQGVPSNLFANSQRQIQGRQQVLPQQQQQQSQNSQQFLYHQQYPQQPLNKKLQQGGLSHTLMQPQIQQQPQQQPNLLQPNQLQSSQQSGMQTSSVMPNMMQSAPLPGLQQNQQSSVQQSTQPMMQQHPQSVLRPQQQQQQTVGIHQQQTPMPQQSVMPPQQQQQQQLMGQQPNTVNMQQSQLIGQQNNVGDMQQQQRLLGQQSNLPNLQQQQQQQQQQQQQQQQQQQLMAQQNLSSMHHQQLGPQSNVSGLQQQPQQQLLGTQSGNSSMQTNQHPAHMLQQPKVPVQQQMQQSAPNLLPNQGQQQQSQPQQQQMMSQIQSQPTQLQQQLGLQQQPNPLQRDMQQRLQASGQASASLLQPQNVMDQQKQLYQPQRALPETSSTSLDSTHQTGQANGVDWQEEVYQKIKTMKEMYLPELNEMYQKIAAKLQQHDSLPQQPKSDQLEKLKIFKTMLERIITFLQVSKSNILPGFKEKLGSYEKQIVNFISTNRPRKPVSSMQQQGQLPPTHMHSMQQQQSQISQGQPHDNQMNSQIQSMNLAGSMVTMQPNNVTNVQHNSVPSVSGVSTSQQNMLNSVQPGPNMDSGQGTSLSSMHQVNAGSLQQNSVSAPQQASINNLPSQSGVNMLQSNINALQSNSNMMQHQHLKQHQEQQILQSQQLKQMQQRHMQFQKQQLMQQQQQQQHQQQQHQQQQHQQAKQQLPAQLPTHQMPQLNQMNDVNDLKIRQGMAVKPGVFQQHLTSGQRSAYSHQPLKPGAQFPISSPQLLQTASPQIPQHSSPQVDQQNLLQSITKSGTPLQSVNSPFVVPSPSTPMAPSPMPGDSEKPISGISSLSNAGNIGHQQTSSAQAAAPSLAIGTPGISASPLLAEFTGPDGAHGNALTAISIKASVTEQPLERLIKAVKSMSPKALSASVSDIGSVVSMIDRIAGSAPGNGSRAAVGEDLVAMTKCRLQARNFITQDGSSGPRKMRRYTSAMPLSVVSSAGSMNDSFKQLTGSETSDLESTATSSIKRPRIEANHALLEEIREINQRLIDTVVDISDEDADPTAAGSAGEGGEGTVVKCSFSAVALSPNLKSQYASAQMSPIQPLRLLVPTNYPNCSPILLDKFPVEIR
Length1197
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.02
Grand average of hydropathy-0.812
Instability index75.66
Isoelectric point9.45
Molecular weight131594.77
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
chromatin DNA binding	GO:0031490	IEA:InterPro
transcription coactivator activity	GO:0003713	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00653
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             8|     539.62|      59|      59|     240|     298|       1
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  106-  140 (50.02/ 6.37)	RQQVLPQQQQQQS...Q.........NSQ..QFLYHQ......QY..PQQP..LNK.......KLQ
  145-  198 (74.56/14.62)	SHTLMQPQIQQQP...Q...QQPNL..LQPNQLQSSQQS.G.MQT..SSVMpnMMQSAPLPGLQQN
  200-  239 (54.28/ 7.80)	QSSV....QQSTQ...PMMQQHPQSVLRPQQQ...QQQTVG.IHQ..QQ........TPMP.....
  240-  298 (118.66/29.43)	QQSVMPPQQQQQQ...QLMGQQPNTVNMQQSQLIGQQNNVGDMQQ..QQRL..LGQQSNLPNLQQQ
  301-  359 (84.67/18.01)	QQQQQQQQQQQQQ...QLMAQQ.NLSSMHHQQL.GPQSNVSGLQQqpQQQL..LGTQSGNSSMQTN
  367-  406 (49.77/ 6.29)	QQPKVPVQQQMQQsapNLL...PNQGQQQQSQ...........PQ..QQQM..MSQ......IQ..
  407-  446 (51.99/ 7.03)	....SQPTQLQQQ...LGLQQQPNP..LQR...........DMQQ..RLQA..SGQAS..ASLLQP
  690-  738 (55.67/ 8.27)	.NSVSAPQQASIN...NL.PSQ.SGVNMLQSNINALQSNSNMMQH..QH....LKQHQE.....QQ
---------------------------------------------------------------------------
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No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     280.11|      51|      52|     741|     791|       2
---------------------------------------------------------------------------
  450-  502 (43.97/ 7.70)	.....................MDQ.QKQLYQPQRALPETSstslD..STH.QTGQangvdWQEEVYQKIKTMKEM.YLP
  503-  536 (40.88/ 6.49)	E.................LNEM.......YQK...............IAA.KLQQ.....HDSLPQQPKSDQLEKlKIF
  537-  593 (45.25/ 8.20)	KtmleriitflqvskSNILPGFKE.KLGSYEKQIVNFIST....N..RPR.KPVS.....SMQQQ.....GQLP....P
  741-  791 (93.26/26.97)	Q..............SQQLKQMQQ.RHMQFQKQQLMQQQQ....Q..QQH.QQQQ.....HQQQQHQQAKQQLPA.QLP
  794-  844 (56.75/12.69)	Q..............MPQLNQMNDvNDLKIR..QGMAVKP....GvfQQHlTSGQ.....RSAYSHQPLK..PGA.QFP
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      56.75|      20|      20|     646|     665|       3
---------------------------------------------------------------------------
  598-  621 (26.21/ 6.71)	SMQQQQSQISQGqphdNQM.NSQIQ
  654-  674 (30.54/ 9.47)	SQQNMLNSVQPG....PNMdSGQGT
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     210.37|      57|      58|     885|     941|       5
---------------------------------------------------------------------------
  885-  941 (100.11/47.24)	VNSP....FVVP...........SPSTPMAPSPMPG.DSEKPISGISSLS.NA.....GNIG......HQ....QTSSAQAAAPSLAIG
  947- 1025 (49.73/19.90)	A.SPllaeFTGPdgahgnaltaiSIKASVTEQPL.....ERLIKAVKSMSpKAlsasvSDIGsvvsmiDR....IAGSAPGNGSRAAVG
 1039- 1092 (60.53/25.75)	RN......FITQ...........DGSS..GPRKMRRyTSAMPLSVVSSAG.SM.....NDSF......KQltgsETSDLESTATS....
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     119.72|      35|      36|      11|      46|       6
---------------------------------------------------------------------------
    2-   19 (27.11/ 7.34)	QNQVHNQ...................G.....qSLPIP.LSA.N
   20-   58 (41.15/18.88)	QSQVRQQLLSQNIQNNMLSaGVQGSSG.....lSSALPsVSGlS
   59-   98 (51.46/21.43)	QSPI.PSVVGQTVNMQNMS.GISQNSGgnsmgqGVPSN.LFA.N
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00653 with Med15 domain of Kingdom Viridiplantae
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