<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00652

Description Uncharacterized protein
SequenceMENFEENRQQRVVSDVEETIFVAVGKNVEKNKTTVFWALQNFAGKKISLLHVHKPSHVFAFKESKCAVNGLKQHADKIQVFDQYLLLLSQAGVQGDSVWIEKDNVEDGIVEVITQQNIRWLVMGAAADKHYSKKLLELKSKKAIFVCQQAPISCHIWFCCKGCLIYTRSGSENRSELEISPTFLLMNSNEEMKQSGHLKLESLGYRLGFPDVEEDADDELEETSCCSVQSSWSSNSLLGTSKSTPLLTDEEEKSQSRLEQAKIEAKNSKKMVYEEVVKRWKEEDNAVEAKCKVKAMQSLCVKEMSQRKELEELLAKEKQEVQRTKNQHDKTVKELQTVQDQNSALEGQLAESHSVVKELEEKIISAVELLISFKQKRDQLRIECGNAQRRVRDIKKSIKREALSFFQPGLLEFSFSELNEATNNFEPSWKIGEGRYGNVYRGLLRHLHVAIKMFPSYGPQSHLKFQNEVEVLSRVRHPNLVTLIGTCPESRSLVFEYLRNGSLEDCLACKNKKSPLRWQTRMQIASDVCSALIYLHSNEPCIIHGNLKPSKVLIDANFGSKLSDFGFFHLIPQGESTGNSALCNESNNDSASVYIDPEYLETGKLTPESDVYSFGIILLRLLTGRPVLRIKKDVKCALEKRNFNSVLDSSAGDWPVAEAEQLAHLALRCCENNRLNRPDLVSEIWSVLEALRVSCVFPVSCSGSKEHRRIPSHFVCPILQEVMKDPQIAADGFTYEGEAIRGWLKSGHNTSPMTNLKLEHCNLLPNYALHQAIIEWQQRW
Length780
PositionTail
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.426
Instability index47.62
Isoelectric point6.55
Molecular weight88600.12
Publications









Function






Annotated function

Functions as an E3 ubiquitin ligase.



GO - Cellular Component
GO - Biological Function
ATP binding	GO:0005524	IEA:UniProtKB-UniRule
protein kinase activity	GO:0004672	IEA:InterPro
ubiquitin-protein transferase activity	GO:0004842	IEA:InterPro

GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00652
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     124.42|      42|      47|     266|     312|       1
---------------------------------------------------------------------------
  266-  312 (63.92/48.70)	KNSkkmvyEEVVKRWKEEDNAVEAKCKVK....AMQSLCVKEMSQRKELEE
  316-  361 (60.50/35.47)	KEK.....QEVQRTKNQHDKTVKELQTVQdqnsALEGQLAESHSVVKELEE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     145.62|      46|     396|      99|     146|       2
---------------------------------------------------------------------------
   99-  146 (69.63/50.89)	WIEKDNVEDGIVEVITQQNIRWLV.MGAAADkhYSKKLLELKSKKAIFV
  497-  543 (76.00/49.04)	YLRNGSLEDCLACKNKKSPLRWQTrMQIASD..VCSALIYLHSNEPCII
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     123.60|      37|     469|     197|     233|       4
---------------------------------------------------------------------------
  197-  233 (67.73/41.46)	HLKLESL.GYRLGFPDVEEDADDELE..ETSCC.SVQSSWS
  664-  704 (55.87/32.96)	HLALRCCeNNRLNRPDLVSEIWSVLEalRVSCVfPVSCSGS
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Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00652 with Med32 domain of Kingdom Viridiplantae
Unable to open file!