<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00648

Description Uncharacterized protein
SequenceMAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPGLGGLGRPVAASYTFAPSSYGQPQLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWKEHTSADGRRYYFNKRTRVSTWDKPFELMTTIERADASTDWKEFTSPDGRKYYYNKVTKQSKWSLPDELKLAREQAEKASIKGTQSETSPNSQTSISFPSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAASETQPALVSVPSTSPVITSSVVANADGFPKTVDAIAPMIDVSSSIGEAVTDNTVAEAKNNLSNMSASDLVGASDKVPPPVTEETRKDAVRGEKVSDALEEKTVEQEHFAYANKLEAKNAFKALLESANVGSDWTWDQALRAIINDRRYGALRTLGERKTAFNEYLGQKKKQDAEERRLKLKKARDDYKKMLEESVELTSSTRWSKAVTMFENDERFKALERERDRKDMFDDHLDELKQKERAKAQEERKRNIIEYRKFLESCDFIKANTQWRKVQDRLEADERCSRLDKMDRLEIFQEYLNDLEKEEEEQRKIQKEELSKTERKNRDEFRKLMEADVALGTLTAKTNWRDYCIKVKDSPPYMAVASNTSGSTPKDLFEDVVEELQKQFQEDKTRIKDAVKLRKITLSSTWTFEDFKASVLEDATSPPISDVNLKLIFDDLLIKVKEKEEKEAKKRKRLEDEFFDLLCSVKVRYLQLLHGKIADNFWRVAKSSVPLEMKASAGGYLTNS
Length873
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.678
Instability index53.67
Isoelectric point6.67
Molecular weight97321.67
Publications









Function






Annotated function


GO - Cellular Component
GO - Biological Function
GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00648
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     143.83|      34|      38|     231|     268|       1
---------------------------------------------------------------------------
  231-  261 (56.90/35.63)	......TDWKEHTSADGRRYYF..NKRTRVSTWDKPFEL
  266-  302 (61.12/45.95)	ERAdasTDWKEFTSPDGRKYYY..NKVTKQSKWSLPDEL
  303-  330 (25.81/ 8.01)	KLA...REQAEKASIKGTQSETspNSQTSIS........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      96.51|      18|      18|      12|      29|       2
---------------------------------------------------------------------------
   12-   27 (26.40/ 9.61)	....GAQVPH......Q.PPMVGSMDP
   28-   48 (23.52/ 7.83)	PRgfGPPIPS......QyRPLVPAPQP
  105-  120 (23.23/ 7.64)	PQ..VMSLPN......A.QP..SNHIP
  121-  144 (23.37/ 7.73)	PS..SLPRPNvqalssY.PPGLGGLGR
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             6|     433.57|      65|      65|     478|     542|       3
---------------------------------------------------------------------------
  421-  467 (55.66/36.84)	...EAKN..NLSNMS.AS.DL.VG.....AS...DKVPPPVTEET.....RKDAV..R..GE.K...VSDAL...........EEKT
  478-  542 (101.45/74.22)	KL.EAKN..AFKALL.ES.AN.VG.....SDWTWDQALRAIINDR.....RYGAL..RTLGE.RKTAFNEYLG...QKKKQDAEERR
  544-  613 (82.17/58.48)	KLkKARD..DYKKMLeES.VE.LT.....SSTRWSKAVTMFENDE.....RFKAL..ERERD.RKDMFDDHLDelkQKERAKAQEER
  615-  677 (60.51/40.81)	.....RNiiEYRKFL.ES.CDfIK.....ANTQWRK.....VQDRleadeRCSRL..DKM.D.RLEIFQEYLN...DLEKEEEEQRK
  688-  755 (59.98/40.37)	R..KNRD..EFRKLM.EAdVA.LGtltakTNWR.DYCIK.VKDSP.....PYMAVasNTSGStPKDLFEDVVE...ELQKQFQE...
  757-  818 (73.81/51.65)	KT.RIKD..AVK..L.RK.IT.LS.....STWTFEDFKASVLEDA.....TSPPI..SDV.N.LKLIFDDLLI...KVKEKEEKEAK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     124.45|      35|      40|     332|     366|       4
---------------------------------------------------------------------------
  332-  366 (55.96/41.41)	PSSVVKAPSSADISSSTVEVIVSSPVAVVPIIAAS
  370-  390 (32.96/20.98)	P.ALVSVPST.............SPVITSSVVANA
  394-  420 (35.53/23.26)	PKTVDAIAPMIDVSSSIGEAVTDNTVA........
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|     115.24|      30|      90|      53|      90|       5
---------------------------------------------------------------------------
   53-   87 (52.91/32.04)	PMASqhfqPGGQGGL.IMNAGFPSQPLQPPFRPlMH
  158-  178 (31.71/10.06)	..........GQPQL.IGNVNIGS...QQPMSQ.MH
  180-  205 (30.61/ 7.80)	PSIS....AGGQLGVsVSQSTVSSTPVQPT......
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00648 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) ASDLVGASDKVPPPVTEETRKDAVRGEKVSDAL
2) MAEMANNAPYSGAQVPHQPPMVGSMDPPRGFGPPIPSQYRPLVPAPQPQHYVPMASQHFQPGGQGGLIMNAGFPSQPLQPPFRPLMHPLPARPGPPAPSHVPPPPQVMSLPNAQPSNHIPPSSLPRPNVQALSSYPPG
3) QLIGNVNIGSQQPMSQMHVPSISAGGQLGVSVSQSTVSSTPVQPTDEQMAATTASAPLPTLQPKSAEGVQTDWK
431
1
161
463
138
234










Molecular Recognition Features






MoRF SequenceStartStop




NANANA