<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00647

Description Uncharacterized protein (Fragment)
SequenceMANNAPYSGAQFRPAVPAPQSQQYVPVASQHFPPAGQGVSVMNAGLPSQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASSLGGLARPFSASYTFAPSSYGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERADAASDWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASPNADISSSTVQVVASSPVSVVPIIAASSIQPAMVSASSASPVIASSVAVSADGIQTTVDALTPMISVSSSVGDAVTVNTDTETKNYSSNLPASNVVAAAVEVPAQETEEMRKDAVTGEKIGDELEEKTVGQEHLAYANKLEAKNAFKALLESANVGSDWSWDQAMQAIINDRRYGALKTLGERKQAFNEYLGQRKKQEAEERRFKLKKAREDYKKMLEESVELTSSTRWSKAVTMFENDERFKALDRERDRRDLFDDHLEELRQKERAKAQEERRQHLIEYRQFLESCDFIKASTQWRKVQDRLEADERCSRLEKIDRLEIFKEYIIDLEKEEEEQRKIQKEVLRRAERKNRDEFRKLLEGDVASGTLTAKTHWRDYCMKVKDLHAYMAVASNTSGSTPKDLFEDVAEELQKQYQEDKTRIKDAVKLKKISLSSTWTFEDFKASILEDVTSPPISDVNIKLVFDDLLERVKEKEEKEAKKRKRLADDFFALLCSIKISASSAWEDCIQLFEGSREFSSIGEESICREIFDEYVTQLKEQAKENERKRKEEK
Length863
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.07
Grand average of hydropathy-0.732
Instability index53.61
Isoelectric point5.86
Molecular weight96533.67
Publications









Function






Annotated function


GO - Cellular Component
U1 snRNP	GO:0005685	IBA:GO_Central
U2-type prespliceosome	GO:0071004	IBA:GO_Central

GO - Biological Function
RNA binding	GO:0003723	IBA:GO_Central

GO - Biological Process
mRNA cis splicing, via spliceosome	GO:0045292	IEA:InterPro
mRNA splicing, via spliceosome	GO:0000398	IBA:GO_Central









Interaction





Binary Interactions











Repeat regions





Repeats

>MDP00647
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      42.93|      15|      16|     309|     323|       1
---------------------------------------------------------------------------
  309-  323 (24.16/12.16)	VTASPNADISSSTVQ
  346-  360 (18.77/ 7.87)	VSASSASPVIASSVA
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|     151.71|      38|      38|     205|     242|       2
---------------------------------------------------------------------------
  205-  242 (76.73/44.79)	DWIEHTAADGRRYYYNKRTRQSTWDKPLELMTPIERAD
  246-  283 (74.99/43.62)	DWKEFTSPDGRKYYYNKVTKQSKWSIPDELKLAREQAE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      37.05|      13|      17|     560|     576|       3
---------------------------------------------------------------------------
  560-  576 (18.90/17.82)	ER.....DRRdlfdDHLEELRQ
  578-  595 (18.15/ 7.71)	ERakaqeERR....QHLIEYRQ
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             4|      90.63|      16|      17|       6|      21|       4
---------------------------------------------------------------------------
    6-   21 (30.36/17.11)	PYSGAQFRPA...VPAPQS
   26-   44 (20.53/ 8.95)	PVASQHFPPAgqgVSVMNA
   73-   86 (20.56/ 8.99)	..HGPPPPQV...VPLPNA
   92-  108 (19.18/ 7.84)	IASGSSLPQA..nVQAPTS
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             5|     277.53|      61|      65|     730|     794|       5
---------------------------------------------------------------------------
  462-  519 (68.64/40.92)	......LESANVGSDWSWDQ....AMQAIINDRRYGALKTLgER.KQAFNE.........................YLGQRKKQEAEERRfKLK
  623-  650 (23.51/ 8.29)	...........................SRLEKIDRLEI..........FKE.........................YIIDL.EKEEEEQR.K..
  651-  724 (45.39/21.50)	IQKEV.LRRAERKNR...DE....FRKLLEGDVASGTLT....A.KTHWRDycmkvkdlhaymavasntsgstpkdLFEDVAEELQK.......
  733-  794 (89.92/65.05)	IKDAVkLKKISLSSTWTFED....FKASILEDVTSPPISDV.NI.KLVFDD.........................LLERVKEKEEKEAK.KRK
  812-  860 (50.07/27.49)	............SSAW..EDciqlFEGS..REFSS..IGEE.SIcREIFDE.........................YVTQLKEQAKENER.KRK
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      86.59|      25|      26|     148|     172|       6
---------------------------------------------------------------------------
   48-   69 (22.24/11.28)	......SQNMQ..PQfpQLMH.qLPARPGQP
  135-  161 (41.02/27.66)	QGTVNVNTGNQyqPM..SQMH..VPSNPAGG
  162-  187 (23.33/12.23)	QLGVSISQSTS.tPL..QHTHeqVAANTA..
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      90.61|      26|      65|     528|     553|       7
---------------------------------------------------------------------------
  528-  553 (44.59/26.01)	MLEESVELTSSTRWSKAVTMFENDER
  596-  621 (46.02/27.05)	FLESCDFIKASTQWRKVQDRLEADER
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      81.10|      28|      47|     383|     410|       9
---------------------------------------------------------------------------
  383-  410 (46.78/28.78)	VGDAVT...VNTDTETKN.......YSSNLPASNVVAA
  423-  460 (34.31/19.35)	RKDAVTgekIGDELEEKTvgqehlaYANKLEAKNAFKA
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00647 with Med35 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) AGQGVSVMNAGLPSQNMQPQFPQLMHQLPARPGQPAPSHGPPPPQVVPLPNAQQSNHIASGSSLPQANVQAPTSYASS
2) IPDELKLAREQAERASTKGTQSEASPNLQTSNSVPSSAVTASP
3) MANNAPYSGAQFRPAVPAPQSQQYVPVASQHFP
4) YGQPQGTVNVNTGNQYQPMSQMHVPSNPAGGQLGVSISQSTSTPLQHTHEQVAANTAPTMASTFQPKSAEVAQTDW
35
271
1
131
112
313
33
206










Molecular Recognition Features






MoRF SequenceStartStop




1) GRKYYYNK
255
262