<p>This section provides information about the protein and gene name(s) and synonym(s) and about the organism that is the source of the protein sequence.<p><a href='/help/names_and_taxonomy_section' target='_top'>More...</a></p>Detailed information on MDP00646

Description Uncharacterized protein
SequenceMSMKSGSLDNWRNYFRSANGDIFDIIDHAVMVAALDCPKEFKLRRDRIAEKLFTCKLTRCSGCDRVELAVPSGNEFDDDEEDCKRDGCEFEAGGSKESKVNSCRDDHVSNQIVSNFSSGDIAEALTDEIEEESQVVGEVLRIKEILHNSRDESDSVLFESLRRLQLMALTVDTLKATEIGKAVNGLRKHGSKQIRHLARTLIEGWKDLVDEWVNATKAIAEGTPDSVNPSVVDEEEGLPSPPLDELAFFTGPSAGIELSQFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPNVLAKDNNSLQMKRQEAVVRPNKPSNKPSSTNSGPGRPLKQNMGQKVDNESKLQQKSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELHDLPKQGLGNRNPQLRPGNYNRHWANGRR
Length448
PositionUnknown
OrganismCitrus sinensis (Sweet orange) (Citrus aurantium var. sinensis)
KingdomViridiplantae
LineageEukaryota> Viridiplantae> Streptophyta> Embryophyta> Tracheophyta> Spermatophyta> Magnoliopsida> eudicotyledons> Gunneridae> Pentapetalae> rosids> malvids> Sapindales> Rutaceae> Aurantioideae> Citrus.
Aromaticity0.05
Grand average of hydropathy-0.885
Instability index49.01
Isoelectric point6.32
Molecular weight50179.50
Publications









Function






Annotated function


GO - Cellular Component
nucleus	GO:0005634	IEA:UniProtKB-SubCell

GO - Biological Function
GO - Biological Process








Interaction





Binary Interactions











Repeat regions





Repeats
>MDP00646
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             2|      45.57|      15|      19|     286|     300|       1
---------------------------------------------------------------------------
  286-  300 (25.45/16.33)	KPSV...ENQNIAKRKQQ
  304-  321 (20.12/11.35)	EPNVlakDNNSLQMKRQE
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      81.57|      21|      45|      96|     118|       2
---------------------------------------------------------------------------
   96-  118 (30.82/24.70)	KESKVNSCRDDhvSNQIVSNFSS
  122-  139 (20.40/ 9.64)	AEALTDEIEEE...SQVVGEV..
  143-  160 (30.35/17.44)	KEILHNS.RDE..SDSVL..FES
---------------------------------------------------------------------------
---------------------------------------------------------------------------
No. of Repeats|Total Score|Length  |Diagonal| BW-From|   BW-To|   Level
             3|      64.78|      14|      38|     357|     370|       3
---------------------------------------------------------------------------
  357-  370 (23.14/14.56)	KLQQKSDKAAINKK
  378-  390 (20.21/11.87)	KL.KSSDEDAVQVK
  397-  409 (21.43/12.99)	KLQE.SYQLAENAK
---------------------------------------------------------------------------




































Explaination for Stockholm format
  The  "Stockholm" format is a system for marking up features in a multiple alignment. These mark-up annotations are preceded by a 'magic' label, of which there are four types. The Stockholm format is used by HMMER, Pfam, and Belvu. Mark-up lines include any characters except whitespace. Underscore ("_") is used instead of space. 

 #=GR (seqname) PP (Generic per-Sequence AND per-Column markup, exactly 1 char per column) where PP is Posterior Probability  [0-9*], (0=0.00-0.05; 1=0.05-0.15; *=0.95-1.00) 
 
 #=GC PP_cons line is Stockholm-format consensus posterior probability annotation for the entire column.  It’s calculated simply as the arithmetic mean of the per-residue posterior probabilities in that column.  This should prove useful in phylogenetic inference applications, for example, where it’s common to mask away non confidently aligned columns of a multiple alignment. The PP_cons line provides an objective measure of the confidence assigned to each column.
 
 #=GC RF line is Stockholm-format reference coordinate annotation, with an x marking each column that the profile considered to be consensus.





Alignment of MDP00646 with Med26 domain of Kingdom Viridiplantae


     
       
      
        
        
        


      
      
   
   

      

      














Intrinsically Disordered Regions








IDR SequenceStartStop




1) QFFDGMDDFGNPRNSGEFIKNRESGRKPSVENQNIAKRKQQTPNEPNVLAKDNNSLQMKRQEAVVRPNKPSNKPSSTNSGPGRPLKQNMGQKVDNESKLQQKSDKAAINKKPLNSQHNKLKSSDEDAVQVKLEATKRKLQESYQLAENAKKQRTIQVMELHDLPKQGLGNRNPQLRPGNYNRHWANGRR
260
448










Molecular Recognition Features






MoRF SequenceStartStop




1) WRNYFR
11
16